Hi all

I'm planning to run a variant calling analysis using Microarray data GSE75010 that contains GSE75010_RAW.tar and GSE75010_complete_dataset.csv.gz. I used to download the .fastq files using SRA Run numbers through Ubuntu/Linux to get .bam and VCF files. However, this is not the case as there are no SRA numbers. Someone can help me?

Regards,

Bony

You must be confused. Those are expression arrays, not genotyping, so you cannot do a 'variant calling analysis', whatever you mean by that. Also they are ARRAYS, so there are no FASTQ or BAM files.