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I used the below command and got the error below. How can I solve it?
>agilent <- getBM(attributes = c("hgnc_symbol", "ensembl_gene_id", "agilent_wholegenome_4x44k_v1"),
filters=c("agilent_wholegenome_4x44k_v1"),
values=probes, mart=ensembl)
Error in `collect()`:
Failed to collect lazy table.
Caused by error in `db_collect()`:
Arguments in `...` must be used.
Problematic argument:
..1 = Inf
Did you misspell an argument name?
Run `rlang::last_trace()` to see where the error occurred.
>sessionInfo( )
R version 4.3.1 (2023-06-16)
Platform: x86_64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.1.2
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] dplyr_1.1.4 BiocManager_1.30.22 readxl_1.4.3 dbplyr_2.4.0 biomaRt_2.58.0
loaded via a namespace (and not attached):
[1] KEGGREST_1.42.0 remotes_2.4.2.1 htmlwidgets_1.6.3 devtools_2.4.5
[5] processx_3.8.2 Biobase_2.62.0 callr_3.7.3 ps_1.7.5
[9] vctrs_0.6.5 tools_4.3.1 bitops_1.0-7 generics_0.1.3
[13] stats4_4.3.1 curl_5.1.0 tibble_3.2.1 fansi_1.0.5
[17] AnnotationDbi_1.64.1 RSQLite_2.3.3 blob_1.2.4 pkgconfig_2.0.3
[21] desc_1.4.2 S4Vectors_0.40.2 lifecycle_1.0.4 GenomeInfoDbData_1.2.11
[25] compiler_4.3.1 stringr_1.5.1 Biostrings_2.70.1 progress_1.2.2
[29] httpuv_1.6.12 GenomeInfoDb_1.38.1 usethis_2.2.2 htmltools_0.5.7
[33] RCurl_1.98-1.13 urlchecker_1.0.1 pillar_1.9.0 later_1.3.1
[37] crayon_1.5.2 ellipsis_0.3.2 cachem_1.0.8 sessioninfo_1.2.2
[41] mime_0.12 tidyselect_1.2.0 digest_0.6.33 stringi_1.8.2
[45] purrr_1.0.2 rprojroot_2.0.4 fastmap_1.1.1 cli_3.6.1
[49] magrittr_2.0.3 pkgbuild_1.4.2 XML_3.99-0.16 utf8_1.2.4
[53] promises_1.2.1 prettyunits_1.2.0 filelock_1.0.2 rappdirs_0.3.3
[57] bit64_4.0.5 XVector_0.42.0 httr_1.4.7 bit_4.0.5
[61] cellranger_1.1.0 png_0.1-8 hms_1.1.3 memoise_2.0.1
[65] shiny_1.8.0 IRanges_2.36.0 miniUI_0.1.1.1 BiocFileCache_2.11.1
[69] profvis_0.3.8 rlang_1.1.2 Rcpp_1.0.11 xtable_1.8-4
[73] glue_1.6.2 DBI_1.1.3 xml2_1.3.6 BiocGenerics_0.48.1
[77] pkgload_1.3.3 rstudioapi_0.15.0 R6_2.5.1 fs_1.6.3
[81] zlibbioc_1.48.0