Txdb object for UCSC hs1 (T2T-CHM13)
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sarah • 0
@0de0a812
Last seen 12 months ago
Finland

Hi,

I tried to create Txdb for UCSC hs1 genome assembly but this is not still supported. Any other suggestion to obtain it? I need to create hs1 Txdb to annotate some chipseq peaks using ChIPseeker.


txdb <- makeTxDbFromUCSC(genome="hs1", tablename="knownGene")

Error in .get_supported_tx_tables(genome) : 
  UCSC genome hs1 is not supported yet

Thanks!

T2T-CHM13 GenomicFeatures • 887 views
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@james-w-macdonald-5106
Last seen 2 days ago
United States

https://github.com/Bioconductor/GenomicFeatures/issues/65

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