Txdb object for UCSC hs1 (T2T-CHM13)
1
0
Entering edit mode
sarah • 0
@0de0a812
Last seen 4 months ago
Finland

Hi,

I tried to create Txdb for UCSC hs1 genome assembly but this is not still supported. Any other suggestion to obtain it? I need to create hs1 Txdb to annotate some chipseq peaks using ChIPseeker.


txdb <- makeTxDbFromUCSC(genome="hs1", tablename="knownGene")

Error in .get_supported_tx_tables(genome) : 
  UCSC genome hs1 is not supported yet

Thanks!

T2T-CHM13 GenomicFeatures • 389 views
ADD COMMENT
2
Entering edit mode
@james-w-macdonald-5106
Last seen 1 day ago
United States

https://github.com/Bioconductor/GenomicFeatures/issues/65

Login before adding your answer.

Traffic: 499 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6