Hello there. I am trying to use biomart to load the mouse genes for version M28 (ensembl 105), but I am getting an error:
ensembl_gene_names <- useEnsembl(biomart = 'genes', dataset = 'mmusculus_gene_ensembl', version = 105)
Error in curl::curl_fetch_memory(url, handle = handle) :
Timeout was reached: [dec2021.archive.ensembl.org:443] Operation timed out after 60001 milliseconds with 0 bytes received
Please note that for other versions this command works just fine. For example, running the following 2 commands does not give an error, these run fine and quickly load an object of class 'Mart'.
ensembl_gene_names <- useEnsembl(biomart = 'genes', dataset = 'mmusculus_gene_ensembl', version = 104)
ensembl_gene_names <- useEnsembl(biomart = 'genes', dataset = 'mmusculus_gene_ensembl', version = 106)
A similar issue occurs for the command
listEnsembl(version = 105)
Which does not occur when using it for version 104 or 106, or any other version I tested for that matter.
Yeah I shot them an email, let's see what they say.