download problem
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@theokirkland3-20611
Last seen 3 months ago
United States

cannot download edgeR package with macOS Sonoma14.2.1, RStudio 2023.12.0+368 R version 4.3.1. Any ideas?

Code should be placed in three backticks as shown below


library(BiocManager)
BiocManager::install("edgeR")

sessionInfo( )

R version 4.3.1 (2023-06-16) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Sonoma 14.2.1

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/Los_Angeles tzcode source: internal

attached base packages: [1] stats graphics grDevices utils datasets [6] methods base

other attached packages: [1] BiocManager_1.30.22 magrittr_2.0.3
[3] lubridate_1.9.2 forcats_1.0.0
[5] stringr_1.5.0 dplyr_1.1.2
[7] purrr_1.0.2 readr_2.1.4
[9] tidyr_1.3.0 tibble_3.2.1
[11] ggplot2_3.4.4 tidyverse_2.0.0

loaded via a namespace (and not attached): [1] utf8_1.2.3 generics_0.1.3
[3] stringi_1.7.12 hms_1.1.3
[5] digest_0.6.31 grid_4.3.1
[7] timechange_0.2.0 pkgload_1.3.2
[9] fastmap_1.1.1 processx_3.8.1
[11] sessioninfo_1.2.2 pkgbuild_1.4.0
[13] urlchecker_1.0.1 ps_1.7.5
[15] promises_1.2.0.1 fansi_1.0.4
[17] scales_1.2.1 cli_3.6.1
[19] shiny_1.7.4 rlang_1.1.1
[21] crayon_1.5.2 ellipsis_0.3.2
[23] bit64_4.0.5 munsell_0.5.0
[25] remotes_2.4.2.1 withr_2.5.0
[27] cachem_1.0.8 devtools_2.4.5
[29] tools_4.3.1 parallel_4.3.1
[31] tzdb_0.4.0 memoise_2.0.1
[33] colorspace_2.1-0 httpuv_1.6.11
[35] mime_0.12 vctrs_0.6.5
[37] R6_2.5.1 lifecycle_1.0.3
[39] htmlwidgets_1.6.2 fs_1.6.2
[41] bit_4.0.5 usethis_2.2.0
[43] vroom_1.6.3 miniUI_0.1.1.1
[45] callr_3.7.3 pkgconfig_2.0.3
[47] pillar_1.9.0 later_1.3.1
[49] gtable_0.3.3 profvis_0.3.8
[51] glue_1.6.2 Rcpp_1.0.10
[53] tidyselect_1.2.0 rstudioapi_0.15.0 [55] xtable_1.8-4 htmltools_0.5.5
[57] compiler_4.3.1 prettyunits_1.1.1

edgeR • 301 views
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Entering edit mode
@gordon-smyth
Last seen 6 hours ago
WEHI, Melbourne, Australia

edgeR is available for installation from Bioconductor, there seems to be no problem from the Bioconductor side. edgeR is available for all technologies that Bioconductor supports. You would need to give the error message you have received, otherwise it's hard to guess what problem you've run into to.

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