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Hi, I am trying to access the ensemble database but keep getting this error. Using bioconductor version 3.18(latest) and R version 4.3.1. The code here is to create a CNV object for recognizing tumor cells.
for (s in samples) {
# Create inferCNV object and save it
infercnv_obj <- createInferCNVObject_call(seurat_obj=seurat_obj, s=s)
}
Error: Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://jul2018.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt