Deleted:Retrieving ceRNA data from the starBase or ENCORI Web API
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V_Vibes • 0
@4aa9b7a6
Last seen 3 days ago
India

I have a query regarding downloading the ceRNA data using the Web API of ENCORI database.

I tried the following command on shell to download the ceRNA genes for the miRNA family miR-10-5p :

curl 'https://rnasysu.com/encori/api/ceRNA/?assembly=hg38&geneType=mRNA&ceRNA=all&miRNAnum=2&family=miR-10-5p&pval=0.01&fdr=0.01&pancancerNum=0' >ENCORI_hg38_ceRNA-network_all.txt

It worked.

But some of the miRNA families in ENCORI have slash in their names, e.g., miR-1-3p/206.

I tried

curl 'https://rnasysu.com/encori/api/ceRNA/?assembly=hg38&geneType=mRNA&ceRNA=all&miRNAnum=2&miRNA=miR-1-3p/206&pval=0.01&fdr=0.01&pancancerNum=0' >ENCORI_hg38_ceRNA-network_all.txt

and

curl 'https://rnasysu.com/encori/api/ceRNA/?assembly=hg38&geneType=mRNA&ceRNA=all&miRNAnum=2&miRNA=miR-1-3p%2F206&pval=0.01&fdr=0.01&pancancerNum=0' >ENCORI_hg38_ceRNA-network_all.txt

But the miRNA families with slash in their names are not identifiable with these commands. How should I input these miRNA families in the curl command?

microRNA starBase ceRNA WebAPI ENCORI • 80 views
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