Question

Gviz and custom database

0

Entering edit mode

luigi.faino • 0

@luigifaino-11088

Last seen 5 months ago

Italy

Dear All, I'm trying to use a custom genome to plot some information using Gviz. I remember that to do so, I need to create my own custom genome but I do not remember how to do so.

Can some one help me?

cheers L

Gviz • 434 views

ADD COMMENT • link updated 5 months ago by James W. MacDonald 67k • written 5 months ago by luigi.faino • 0

score 0 · Answer 1 · 2024-05-31

0

Entering edit mode

James W. MacDonald 67k

@james-w-macdonald-5106

Last seen 2 hours ago

United States

https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html

ADD COMMENT • link 5 months ago James W. MacDonald 67k

0

Entering edit mode

Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz.

L

ADD REPLY • link 5 months ago luigi.faino • 0

0

Entering edit mode

The vignette for Gviz says you can use a DNAStringSet, generated using Biostrings. Have you tried that?

ADD REPLY • link 5 months ago James W. MacDonald 67k