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Gviz
•
reset
0
votes
3
replies
1.0k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 13 hours ago by
Maryna
• 0 • written 10 months ago by
Michael
• 0
0
votes
3
replies
301
views
Gviz and custom database
Gviz
updated 8 weeks ago by
James W. MacDonald
66k • written 8 weeks ago by
luigi.faino
• 0
1
vote
2
replies
1.2k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 3 months ago by
Tim Peters
▴ 190 • written 17 months ago by
jose.ramirez1
▴ 10
0
votes
1
reply
288
views
GC content track on GVIZ
Gviz
updated 5 months ago by
James W. MacDonald
66k • written 5 months ago by
ilaria.maurizio
• 0
1
vote
3
replies
1.6k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 8 months ago by
Robert Ivanek
▴ 740 • written 3.2 years ago by
ltzhou
• 0
0
votes
0
replies
447
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
8 months ago
dbsgtk
• 0
1
vote
0
replies
565
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
8 months ago
yujin
▴ 10
1
vote
3
replies
705
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 8 months ago by
Hervé Pagès
16k • written 9 months ago by
yujin
▴ 10
0
votes
5
replies
1.9k
views
Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
19 months ago • updated 9 months ago
Daniel E. Weeks
▴ 30
0
votes
2
replies
621
views
how to add annotation on individual track
Gviz
updated 14 months ago by
Robert Ivanek
▴ 740 • written 14 months ago by
xiaofeiwang18266
▴ 50
0
votes
0
replies
472
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
17 months ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
721
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
17 months ago
gilliangoobie
• 0
0
votes
2
replies
1.3k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi
Gviz
updated 24 months ago by
James W. MacDonald
66k • written 2.0 years ago by
anikajohn
• 0
0
votes
1
reply
1.1k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
2.0 years ago
rohitsatyam102
▴ 20
2
votes
1
reply
1.5k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 2.1 years ago by
James W. MacDonald
66k • written 2.1 years ago by
hsf378
• 0
1
vote
3
replies
2.0k
views
GVIZ giving error with loading hg38 genome
R
Gviz
2.3 years ago
RUser743
• 0
1
vote
2
replies
1.6k
views
Gviz and datatracks
Gviz
updated 2.4 years ago by
corinne_hutfilz
• 0 • written 2.5 years ago by
Bogdan
▴ 670
0
votes
0
replies
602
views
Color of 2nd exon
GViz
2.5 years ago
underscore
• 0
1
vote
1
reply
961
views
Gviz DataTrack data transformation on the fly
aggregation
Gviz
DataTrack
updated 2.5 years ago by
Robert Ivanek
▴ 740 • written 2.6 years ago by
Robert
▴ 10
0
votes
0
replies
673
views
Modify y axis or add second y axis in Gviz
OverlayTrack
Gviz
2.6 years ago
Robert
▴ 10
4
votes
4
replies
2.4k
views
Gviz: ylim of the AlignmentsTrack
gviz
gviz-package
updated 2.6 years ago by
Pariksheet Nanda
▴ 120 • written 5.8 years ago by
wsciekly.maciek
▴ 10
0
votes
0
replies
973
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
2.6 years ago
Ahdee
▴ 50
0
votes
0
replies
644
views
Y axis Data Track GVIZ
GVIZ
2.8 years ago • updated 2.6 years ago
rbenel
▴ 40
1
vote
1
reply
1.6k
views
GVIZ on R not loading mm10 from UCSC
Gviz
2.8 years ago
RUser743
• 0
0
votes
3
replies
1.0k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
2.8 years ago
Hartorthereal
• 0
1
vote
3
replies
1.4k
views
Gradient dotplot
Gviz
2.9 years ago • updated 2.8 years ago
sophieagger
• 0
0
votes
0
replies
893
views
One read per line and other ordering of reads in Gviz
Gviz
2.9 years ago
pillailab1
• 0
0
votes
4
replies
1.3k
views
window parameter in DataTrack function with a single sample
Gviz
2.9 years ago • updated 2.8 years ago
rbenel
▴ 40
0
votes
1
reply
1.1k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 2.9 years ago by
James W. MacDonald
66k • written 2.9 years ago by
mar.pieraccioli
▴ 10
0
votes
4
replies
1.4k
views
AlignmentsTrack empty plot
Coverage
RNASeq
plot
Gviz
updated 18 months ago by
James W. MacDonald
66k • written 3.0 years ago by
karlaarz
• 0
1
vote
3
replies
1.2k
views
Can't produce a generegiontrack from my txdb anymore
gviz
GenomicFeatures
3.0 years ago
A.J.
▴ 20
0
votes
0
replies
926
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.2 years ago
gdeniz
• 0
0
votes
0
replies
828
views
Gviz - Fixed width of title panel on left
Gviz
3.2 years ago
rheery
• 0
0
votes
0
replies
725
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
3.3 years ago
ginlucks
• 0
0
votes
3
replies
1.1k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.3 years ago by
James W. MacDonald
66k • written 3.3 years ago by
svenbioinf
• 0
0
votes
0
replies
1.0k
views
Gviz import lor reads from bam file
Gviz
longreads
3.3 years ago
ginlucks
• 0
0
votes
1
reply
824
views
two tracks have the same axis
plot
Gviz
3.7 years ago
腾
• 0
0
votes
2
replies
1.1k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation
Alignment
Gviz
3.7 years ago
Vaibhav
• 0
0
votes
2
replies
1.1k
views
Gviz vertical text labels
Gviz
updated 3.7 years ago by
James W. MacDonald
66k • written 3.7 years ago by
Jake
▴ 90
0
votes
1
reply
957
views
Gviz, keeping strand information while zooming in
Gviz
strand
3.8 years ago
svenbioinf
• 0
2
votes
2
replies
1.3k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.9 years ago by
James W. MacDonald
66k • written 3.9 years ago by
paul.jaschke
▴ 10
0
votes
1
reply
996
views
Gviz package for plotting DMRs
Gviz
DMRs
updated 4.0 years ago by
Robert Ivanek
▴ 740 • written 4.0 years ago by
ayeshatariq78
• 0
0
votes
3
replies
2.2k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
4.0 years ago
roman.hillje
• 0
1
vote
3
replies
865
views
Highlight uniq transcripts in Gviz
Gviz
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
peris_baba
• 0
0
votes
2
replies
1.1k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.2 years ago by
Robert Ivanek
▴ 740 • written 4.2 years ago by
ari.loytynoja
• 0
0
votes
2
replies
1.1k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz
plotTracks
updated 4.4 years ago by
Robert Ivanek
▴ 740 • written 4.4 years ago by
syliang
• 0
0
votes
4
replies
1.2k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions
gviz
updated 4.4 years ago by
liz.ingsimmons
▴ 140 • written 4.4 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
943
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 4.4 years ago by
Robert Ivanek
▴ 740 • written 5.0 years ago by
Robert
▴ 10
1
vote
5
replies
1.1k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.5 years ago by
James W. MacDonald
66k • written 4.5 years ago by
sinha.puja
▴ 10
0
votes
2
replies
926
views
BioMart webservice returned an invalid result
gviz
biomart
4.5 years ago
adrian86
• 0
50 results • Page
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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