Might be a stupid question. I'm very new to R Studio in general but I am trying to use R to do proteomic analysis. Raw data is normalised and I am trying to use limma to create a DE table. Code has worked previously for a colleague but I can't seem to get limma to run.
Tried
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(version = "3.19")
which I used to install BiocManager which works.
To install Limma have tried
install.packages("limma")
which results in the error message: Warning in install.packages : package 'limma' is not available for this version of R
A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages have subsequently tried
BiocManager::install("limma")
BiocManager::install(pkgs = "limma", force = TRUE)
which seems to install the packages but still can't get the function to work and then get above error message again.
My colleague was using a windows laptop and the version of BiocManager was 3.18. If I try with 3.18 I get an error message. I'm using a M2 Mac and am using the corresponding R 4.4.1 version which is up to date.
I have tried looking at cran as suggested above but keep coming up short. Any advice very appreciated.
