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Bioconductor
•
reset
0
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0
replies
32
views
News:
User handle changes to site
Bioconductor
handles
4 days ago
natay.aberra
10
0
votes
1
reply
59
views
possible problem with mzR? cannot load Msnset for proteomics analysis
MSnbase
mzR
Bioconductor
limma
updated 29 days ago by
Laurent Gatto
1.4k • written 29 days ago by
yaare
• 0
1
vote
4
replies
116
views
Failing to install DEP package. Some strange error.
R
Bioconductor
Install
DEP
4 weeks ago • updated 29 days ago
tpm
• 0
0
votes
3
replies
79
views
Why git links at the bottom of a package of the current release point to the devel code?
Bioconductor
4 weeks ago
SamGG
▴ 270
0
votes
3
replies
108
views
Which library now contains the ssdCoverage command that used to be found in the htseqtools package for R version 4.0.1 ?
Deprecation
chipseq
htseqtools
Bioconductor
updated 29 days ago by
Basti
▴ 60 • written 4 weeks ago by
Mick
• 0
0
votes
1
reply
113
views
Biological replicates in DESeq2
DESeq2
Bioconductor
RNASeqR
updated 5 weeks ago by
ATpoint
▴ 570 • written 5 weeks ago by
Blanca
• 0
0
votes
18
replies
295
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
updated 8 days ago by
Ginger
• 0 • written 5 weeks ago by
lea
• 0
0
votes
0
replies
63
views
Job:
Bioinformatician at MiroBio, Oxford, UK
Transcriptomics
Bioconductor
Statistics
Job
Biocon
5 weeks ago
m.jackson
• 0
0
votes
2
replies
82
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
updated 5 weeks ago by
Martin Morgan
25k • written 6 weeks ago by
tanya
• 0
1
vote
1
reply
75
views
How to find the source code of the package STRINGdb ?
STRINGdb
Bioconductor
updated 6 weeks ago by
shepherl
2.6k • written 6 weeks ago by
deepue
▴ 10
1
vote
4
replies
150
views
Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData
methy
Bioconductor
minfi
7 weeks ago
shweta
• 0
3
votes
3
replies
102
views
News:
Bioconductor code of conduct
biocon
code-of-conduct
Bioconductor
updated 8 weeks ago by
Lluís Revilla Sancho
▴ 630 • written 8 weeks ago by
Laurent Gatto
1.4k
1
vote
4
replies
168
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 9 weeks ago by
Kevin Blighe
2.7k • written 9 weeks ago by
Taufiq
• 0
2
votes
2
replies
158
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 9 weeks ago by
Martin Morgan
25k • written 9 weeks ago by
tina
• 0
0
votes
1
reply
151
views
News:
Community engagement and outreach award
bioconductor
bioc2020
award
community
News
written 10 months ago by
shepherl
2.6k
0
votes
2
replies
115
views
could not find function "mplus.view.plots"
gh5
mplus
Bioconductor
updated 11 weeks ago by
shepherl
2.6k • written 11 weeks ago by
Chad Lance
• 0
0
votes
5
replies
213
views
Installing Bioconductor packages in Docker
Bioconductor
DOCKER
RShiny
updated 11 weeks ago by
Konstantinos Yeles
▴ 50 • written 12 weeks ago by
adklts
• 0
1
vote
3
replies
127
views
Error by installing BiocManager
BiocInstaller
BiocManager
Bioconductor
12 weeks ago
adklts
• 0
5
votes
3
replies
169
views
Issues with installation status of R package rtracklayer
rtracklayer
Bioconductor
3 months ago
svlachavas
▴ 780
0
votes
1
reply
123
views
Error with package clusterProfiler: "Error in abs(stats) : non-numeric argument to mathematical function"
Bioconductor
BIOCOND
clusterProfiler
updated 3 months ago by
josh.stolz
• 0 • written 3 months ago by
María
• 0
3
votes
6
replies
220
views
Extract canonical coding sequence with getBM
Bioconductor
biomaRt
3 months ago
heiko_kin
▴ 50
0
votes
1
reply
173
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3 months ago by
Martin Morgan
25k • written 3 months ago by
Khai-Chuong
• 0
1
vote
3
replies
157
views
Error in Differential Expression Analysis with Data Set from Matrix
DESeq2
DifferentialExpression
Bioconductor
updated 3 months ago by
Michael Love
32k • written 3 months ago by
didemdkn
• 0
3
votes
9
replies
4.4k
views
merge fastq.gz in R? (or in Windows?)
rnaseq
bioconductor
fastq
updated 3 months ago by
Rafael
• 0 • written 5.7 years ago by
mk.applebee
• 0
0
votes
1
reply
88
views
Calculations (averaging and normalization) with expressionset
RTCA
Biobase
Bioconductor
expressionset
updated 4 months ago by
James W. MacDonald
56k • written 4 months ago by
VanessaOak
• 0
0
votes
0
replies
41
views
How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq
Bioconductor
conversion
4 months ago
heiko_kin
▴ 50
2
votes
2
replies
108
views
Microarray
Bioconductor
4 months ago
mah.khansary
• 0
0
votes
1
reply
133
views
Installation of pcaGoPromoter fails
pcaGoPromoter
Bioconductor
updated 4 months ago by
Guido Hooiveld
★ 2.9k • written 4 months ago by
raven
• 0
1
vote
2
replies
147
views
Bioconductor install error
phyloseq
Bioconductor
4 months ago
Tess
• 0
0
votes
2
replies
151
views
How to remove dendrogram from pheatmaps?
pheatmapr
DESeq2
Bioconductor
updated 4 months ago by
Guido Hooiveld
★ 2.9k • written 4 months ago by
Khawlah
• 0
0
votes
1
reply
95
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP
R
Bioconductor
Plot
updated 4 months ago by
shepherl
2.6k • written 4 months ago by
tpm
• 0
0
votes
3
replies
466
views
Package ‘#####’ was installed before R 4.0.0: please re-install it
Bioconductor
RNASeqData
DESeq2
Rsubread
updated 4 months ago by
James W. MacDonald
56k • written 4 months ago by
Rafael
• 0
0
votes
0
replies
120
views
Job:
Bioinformatician in Experimental Cancer Research (80-100%)
Switzerland
Bioconductor
Basel
job
4 months ago
Robert Ivanek
▴ 660
0
votes
2
replies
91
views
Revisiting gene name inclusion in TxDB
Bioconductor
GenomicFeatures
TxDB
5 months ago
k.vitting.seerup
▴ 100
4
votes
6
replies
519
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 5 months ago by
Martin Morgan
25k • written 5 months ago by
Michael Steinbaugh
▴ 70
2
votes
2
replies
139
views
Bioconductor phyloseq taking forever to install?
Bioconductor
phyloseq
5 months ago
garfield320
▴ 30
1
vote
1
reply
92
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 5 months ago by
Laurent Gatto
1.4k • written 5 months ago by
Pedro
▴ 10
4
votes
0
replies
84
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
5 months ago
shepherl
2.6k
2
votes
2
replies
115
views
Email address change on bioconductor support site
bioconductor
updated 5 months ago by
Istvan Albert
30 • written 5 months ago by
Leonard Goldstein
▴ 110
1
vote
0
replies
207
views
News:
Project-wide Code of Conduct statement for Bioconductor
Coc
code
conduct
Bioconductor
News
6 months ago
Laurent Gatto
1.4k
1
vote
6
replies
462
views
installing bioconductor packages with DNS problem
bioconductor
biocmanager
installing packages
dns
updated 8 months ago by
Martin Morgan
25k • written 8 months ago by
PabloR
▴ 10
1
vote
3
replies
143
views
unable to install DESeq2 there is no package called XML
deseq2
bioconductor
windows
xml
installation
updated 8 months ago by
Michael Love
32k • written 8 months ago by
sarah3
• 0
0
votes
1
reply
134
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 3 months ago by
alex.pico
• 0 • written 8 months ago by
ellisjc
• 0
0
votes
3
replies
205
views
Can I use compareCluster function to compare genes upregulated in various clusters of cells?
clusterProfiler
bioconductor
updated 9 months ago by
James W. MacDonald
56k • written 9 months ago by
charlesgwellem
▴ 10
0
votes
0
replies
98
views
News:
New Package Submission Workflow Updates!
new packages
submission
bioconductor
News
9 months ago
shepherl
2.6k
1
vote
3
replies
264
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 10 months ago by
Martin Morgan
25k • written 10 months ago by
chen
• 0
0
votes
0
replies
85
views
News:
Award Nomination Deadline Monday June 15th!
bioc2020
awards
bioconductor
recognition
News
10 months ago
shepherl
2.6k
0
votes
0
replies
79
views
News:
Scientific or Informatic Technology Advancement Award!
bioconductor
bioc2020
awards
advancement
new technology
News
10 months ago
shepherl
2.6k
0
votes
0
replies
103
views
News:
Long-term contribution award
bioc2020
bioconductor
lifetime
recognition
awards
News
10 months ago
shepherl
2.6k
0
votes
1
reply
96
views
compareCluster error: On clusterProfiler DEGs enrichments analysis
clusterProfiler
Bioconductor
R
DEGs
10 months ago
tpm
• 0
626 results • Page
1 of 13
Recent ...
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Answer: Differential Transcript Usage: complex factorial design
by
Gordon Smyth
42k
edgeR does differential expression for transcripts via the catchSalmon function followed the usual edgeR pipelines as you would do for gene…
Comment: RSamtools idxstatsBam not working with remote bam file
by
mja18
▴ 30
Thanks Martin. Yes, that works.
Answer: RSamtools idxstatsBam not working with remote bam file
by
Martin Morgan
25k
Can you tell me if the following works for you? In a new R session ```{r} library(Rsamtools) setMethod(idxstatsBam, "BamFile", …
Comment: Aspli: error with gbCounts
by
achernomoretz
• 0
Hi Jeremy. We got it and we are working on the issue. Thanks for your patience. A
Comment: Aspli: error with gbCounts
by
jbono
• 0
Sorry, I forgot to respond here that I sent the file via email. Please let me know if you didn't receive it, thanks!
Votes
Answer: RSamtools idxstatsBam not working with remote bam file
Running > 100 samples per group - memory issues
R failing to load genome files from EnsDb.Hsapiens.v86
Comment: TCGA data analysis
Comment: BSGenome Forge for non-model organism
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