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Bioconductor
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toGRanges help!
GenomicRanges
toGRanges
Bioconductor
6 days ago
samantha.haque
• 0
1
vote
0
replies
326
views
News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
updated 7 days ago by
anselmsara
• 0 • written 9 weeks ago by
shepherl
3.1k
0
votes
0
replies
25
views
News:
Nominations for Bioconductor Technical Advisory Board is open
Board
Organization
Bioc2022
Bioconductor
7 days ago
shepherl
3.1k
0
votes
0
replies
41
views
News:
Junior Developer or New Package Developer Award
Recognition
Awards
Bioc2022
Bioconductor
14 days ago
shepherl
3.1k
8
votes
0
replies
109
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
22 days ago • updated 14 days ago
shepherl
3.1k
0
votes
0
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27
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News:
Search on bioconductor.org unavailable
Website
bioconductor.org
Bioconductor
14 days ago
shepherl
3.1k
0
votes
3
replies
189
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager
R
gofortran
Bioconductor
16 days ago • updated 15 days ago
Olivia
• 0
0
votes
0
replies
60
views
News:
Bioconductor Scientific or Informatic Technology Advancement Award!
Recognition
Awards
Bioc2022
Bioconductor
21 days ago
shepherl
3.1k
2
votes
5
replies
153
views
How to get around the warning message: mzR has been built against a different Rcpp version
mzR
Bioconductor
25 days ago • updated 22 days ago
weiping.li93
• 0
0
votes
0
replies
49
views
News:
Bioconductor Long-term Contribution Award
Recognition
Awards
Bioc2022
Bioconductor
28 days ago
shepherl
3.1k
0
votes
2
replies
152
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
7 weeks ago • updated 29 days ago
shepherl
3.1k
0
votes
0
replies
61
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News:
Support Site Bioconductor Award
Recognition
Awards
Bioc2022
Bioconductor
5 weeks ago
shepherl
3.1k
0
votes
0
replies
75
views
News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Bioc2022
Awards
Bioconductor
Recognition
6 weeks ago
shepherl
3.1k
0
votes
0
replies
65
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
7 weeks ago
shepherl
3.1k
0
votes
0
replies
73
views
News:
Bioconductor Award for Outstanding Documentation
Bioc2022
Awards
Bioconductor
Recognition
7 weeks ago
shepherl
3.1k
0
votes
5
replies
183
views
DESeqDataSetFromMatrix Function Error
DESeq2
Bioconductor
updated 7 weeks ago by
Michael Love
36k • written 7 weeks ago by
Kevin
• 0
1
vote
6
replies
315
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 7 weeks ago by
Marcel Ramos
570 • written 8 weeks ago by
jose
▴ 10
1
vote
2
replies
200
views
Can not install Biostrings in R
Bioconductor
updated 8 weeks ago by
Marcel Ramos
570 • written 8 weeks ago by
lulucode
• 0
3
votes
6
replies
463
views
Unable to install "limma" package on RStudio
Bioconductor
limma
limmaGUI
3 months ago • updated 12 weeks ago
jaydengitt
• 0
1
vote
1
reply
210
views
Bioinformatics exercises for beginner
beginner
Bioconductor
tutorial
examples
updated 3 months ago by
Gordon Smyth
45k • written 3 months ago by
Sara
• 0
0
votes
7
replies
984
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 3 months ago by
Michael Love
36k • written 3 months ago by
Victor
• 0
0
votes
0
replies
285
views
Error: BiocParallel errors
Bioconductor
metagene
GenomicAlignments
3 months ago
barrypraveen
• 0
7
votes
4
replies
421
views
Start to End RNA-Seq with R Bioconductor
Bioconductor
Workflow
updated 4 months ago by
Gordon Smyth
45k • written 4 months ago by
sarastew1994
• 0
0
votes
0
replies
171
views
Job:
Flatiron Research Fellow, Center for Computational Biology
Bioconductor
4 months ago
simonsF.careers
• 0
2
votes
4
replies
1.7k
views
Installing packages by bioconductor version 3.14
Bioconductor
5 months ago
Evan
▴ 20
7
votes
8
replies
1.2k
views
Installing Bioconductor
Bioconductor
5 months ago
array chip
▴ 420
3
votes
1
reply
312
views
Elastic Net for RNAseq data
Bioconductor
RNASeq
updated 6 months ago by
Michael Love
36k • written 6 months ago by
Miguel
▴ 10
8
votes
0
replies
255
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
6 months ago
shepherl
3.1k
2
votes
1
reply
318
views
relationship between bioconda and bioconductor
Bioconductor
updated 7 months ago by
James W. MacDonald
59k • written 7 months ago by
Alexandre
• 0
0
votes
2
replies
343
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install
Bioconductor
DESeq2
7 months ago
ladypurrsia
▴ 10
2
votes
2
replies
445
views
My "Ask a Question" post has been flagged as spam - it is not
Bioconductor
updated 7 months ago by
Gordon Smyth
45k • written 7 months ago by
ladypurrsia
▴ 10
0
votes
1
reply
313
views
JAVA_HOME cannot be determined on Windows on Bioconductor platform report
bioc
Bioconductor
updated 7 months ago by
Hervé Pagès
15k • written 7 months ago by
cannin
▴ 20
3
votes
1
reply
286
views
News:
Service problems noted
bioconductor
updated 7 months ago by
shepherl
3.1k • written 7 months ago by
Vincent J. Carey, Jr.
6.6k
0
votes
1
reply
999
views
Unable to install Bioconductor packages
Bioconductor
updated 7 months ago by
shepherl
3.1k • written 7 months ago by
Igor
• 0
4
votes
3
replies
2.1k
views
Warning messages on Apple M1 BigSur
Bioconductor
updated 8 months ago by
Vincent J. Carey, Jr.
6.6k • written 8 months ago by
Alexandre
• 0
0
votes
7
replies
691
views
Returning to edgeR version 3.26.1?
edgeR
Bioconductor
updated 7 months ago by
Gordon Smyth
45k • written 8 months ago by
mvanhorn
• 0
0
votes
1
reply
231
views
Job:
Computational Biologist at Chinook Therapeutics
RNASeq
Bioconductor
Genomics
written 8 months ago by
eolson
• 0
1
vote
1
reply
197
views
Can we read and plot our own .bed data into the Gviz plotTracks? If yes, then how?
Bioconductor
updated 8 months ago by
James W. MacDonald
59k • written 8 months ago by
Yasha
• 0
0
votes
5
replies
432
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install
VariantAnnotation
Bioconductor
chromVAR
updated 8 months ago by
Vincent J. Carey, Jr.
6.6k • written 9 months ago by
Hannah
• 0
1
vote
2
replies
522
views
How to install "blockwiseModules" in Bioconductor version 3.13
Bioconductor
written 9 months ago by
orchidsinvalley
• 0
0
votes
2
replies
362
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP
limma
Bioconductor
ChAMPdata
9 months ago • updated 8 months ago
Jinyue
• 0
5
votes
4
replies
773
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 9 months ago by
Kevin Blighe
3.5k • written 9 months ago by
Rachel
• 0
1
vote
1
reply
397
views
Error in curl; timeout when using biomaRt
biomaRt
curl
timeout
getBM
Bioconductor
updated 9 months ago by
swbarnes2
★ 1.0k • written 9 months ago by
nlin0907
• 0
0
votes
0
replies
176
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics
genomes
R
MultipleSequenceAlignment
Bioconductor
9 months ago
K.
• 0
0
votes
2
replies
1.6k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
9 months ago
charlotte
▴ 10
0
votes
0
replies
265
views
News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
9 months ago
shepherl
3.1k
7
votes
6
replies
969
views
How to obtain summary statistics for all Bioc releases
bioconductor
release
4.0 years ago
Robert Ivanek
▴ 730
3
votes
0
replies
241
views
News:
Call for Community Volunteered Package Reviewers
Community
SinglePackageBuilder
Reviews
Bioconductor
10 months ago
shepherl
3.1k
1
vote
1
reply
1.9k
views
Unable to install bioconductor packages
Bioconductor
updated 11 months ago by
Mike Smith
★ 5.5k • written 11 months ago by
emsie25
• 0
1
vote
1
reply
245
views
Is there any API to get info of pkg in bioconductor like cranchecks?
Bioconductor
CRAN
updated 11 months ago by
Mike Smith
★ 5.5k • written 11 months ago by
Butui
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Got that sir, thanks so much!
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
tom.kloter
• 0
Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…
Answer: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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