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Bioconductor version cannot be validated
Bioconductor
5 days ago
xlu.cpu
• 0
0
votes
1
reply
168
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 7 days ago by
James W. MacDonald
63k • written 9 days ago by
Aytaç
• 0
1
vote
8
replies
966
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
Bioconductor
Devel
devel
updated 3 days ago by
Hervé Pagès
16k • written 3 months ago by
shepherl
3.5k
0
votes
2
replies
213
views
MACS2 not installing
Bioconductor
22 days ago
alia.sinqua
• 0
0
votes
0
replies
290
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
26 days ago
NewtoBioconductor
• 0
0
votes
0
replies
181
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
JobPosting
artificialintelligence
machinelearning
27 days ago • updated 15 days ago
Gordon Smyth
48k
1
vote
4
replies
302
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
5 weeks ago
patrick.turko
• 0
0
votes
1
reply
113
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Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor
netboost
updated 5 weeks ago by
ATpoint
★ 3.4k • written 5 weeks ago by
laura1_z
• 0
1
vote
2
replies
198
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 5 weeks ago by
James W. MacDonald
63k • written 5 weeks ago by
Ashton
▴ 10
1
vote
13
replies
6.4k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 6 weeks ago by
Mehdi
• 0 • written 9 months ago by
k.wickstrom
• 0
0
votes
0
replies
149
views
News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
Community
Website
7 weeks ago
Maria Doyle
▴ 30
0
votes
18
replies
1.7k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
updated 23 days ago by
Jenifer
• 0 • written 2.6 years ago by
lea
• 0
0
votes
2
replies
399
views
vmatchPattern on DNAstring set
Bioconductor
8 weeks ago
Avner
• 0
0
votes
1
reply
157
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression
Bioconductor
GEOquery
MethylationArrayData
9 weeks ago
Arianna
• 0
0
votes
1
reply
209
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 9 weeks ago by
Mike Smith
★ 6.1k • written 9 weeks ago by
Catia
• 0
3
votes
5
replies
416
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 9 weeks ago by
Vincent J. Carey, Jr.
6.7k • written 9 weeks ago by
Ndimensional
▴ 20
0
votes
0
replies
175
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News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
Conference
10 weeks ago
Maria Doyle
▴ 30
0
votes
0
replies
161
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News:
Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor
Network
RNASeqData
SystemsBiology
10 weeks ago
info
▴ 10
0
votes
5
replies
387
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What to whitelist in Firewall to allow downloading packages
Bioconductor
NetworkInference
updated 10 weeks ago by
shepherl
3.5k • written 11 weeks ago by
Albert
• 0
1
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0
replies
149
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News:
Bioconductor Website Redesign - We Need Your Input!
Bioconductor
Website
3 months ago
shepherl
3.5k
0
votes
1
reply
210
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BiocManager Package installs
Bioconductor
updated 3 months ago by
shepherl
3.5k • written 3 months ago by
joseph.cerra
• 0
0
votes
2
replies
426
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
5 months ago • updated 3 months ago
shepherl
3.5k
0
votes
0
replies
134
views
News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
3 months ago
shepherl
3.5k
0
votes
6
replies
464
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Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
3 months ago
simone.tiberi
• 0
0
votes
0
replies
175
views
News:
Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor
Community
BioC2023
4 months ago
Maria Doyle
▴ 30
0
votes
4
replies
384
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor
Transcriptomics
DifferentialExpression
DESeq2
4 months ago
sreeshmaraj72
• 0
1
vote
0
replies
333
views
News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
4 months ago
shepherl
3.5k
0
votes
0
replies
221
views
News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
4 months ago
shepherl
3.5k
0
votes
0
replies
258
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News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Awards
Bioconductor
Bioc2023
Recognition
5 months ago • updated 4 months ago
shepherl
3.5k
0
votes
0
replies
239
views
News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
Recognition
4 months ago
shepherl
3.5k
0
votes
0
replies
237
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
5 months ago • updated 4 months ago
shepherl
3.5k
0
votes
0
replies
759
views
News:
Join the Technical Advisory Board
Bioconductor
News
Organization
4 months ago
Maria Doyle
▴ 30
0
votes
1
reply
344
views
Potential segfault bug in featureCounts using long read data
Bioconductor
Rsubread
featureCounts
updated 4 months ago by
Wei Shi
★ 3.5k • written 5 months ago by
Carlos
• 0
0
votes
0
replies
284
views
News:
RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
Event
Community
Training
4 months ago
Maria Doyle
▴ 30
0
votes
0
replies
315
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor
riboSeqR
4 months ago
Javier
• 0
0
votes
0
replies
201
views
News:
Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training
Bioconductor
Event
Community
Tutorial
5 months ago
Maria Doyle
▴ 30
0
votes
0
replies
238
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
5 months ago
shepherl
3.5k
1
vote
0
replies
226
views
News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training
Bioconductor
Event
Community
News
5 months ago
Maria Doyle
▴ 30
0
votes
2
replies
412
views
GenomicRanges coult not be loaded after R upgrade
DESeq2
Bioconductor
GenomicRanges
updated 4 months ago by
Virginie
• 0 • written 5 months ago by
gs12
• 0
0
votes
1
reply
1.6k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor
Install
updated 5 months ago by
ATpoint
★ 3.4k • written 5 months ago by
3305504122
• 0
0
votes
0
replies
199
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
5 months ago
Maria Doyle
▴ 30
0
votes
0
replies
207
views
How to extract the counts for non-split reads from paired end RNA-seq data?
rsubread
featurecounts
Bioconductor
countsextraction
5 months ago
barrypraveen
• 0
0
votes
0
replies
260
views
News:
Bioconductor Release 3.16 Code Freeze
release
Release
Bioconductor
5 months ago
shepherl
3.5k
1
vote
3
replies
443
views
how to add an enrichment score to a kegg pathway enrichment analysis?
KEGG
clusterProfiler
Bioconductor
updated 5 months ago by
Guido Hooiveld
★ 3.7k • written 5 months ago by
m-bihie
▴ 10
0
votes
1
reply
333
views
Specific versions of packages
Bioconductor
updated 6 months ago by
Mike Smith
★ 6.1k • written 6 months ago by
Gábor Csárdi
▴ 90
0
votes
1
reply
770
views
News:
BioC2023 abstract submission is now open!
presentation
BioC2023
Conference
community
Bioconductor
written 7 months ago by
Maria Doyle
▴ 30
0
votes
0
replies
303
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
6 months ago
shepherl
3.5k
3
votes
6
replies
689
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 6 months ago by
darrelvanhoy
• 0 • written 6 months ago by
shepherl
3.5k
0
votes
0
replies
228
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
6 months ago
Maria Doyle
▴ 30
2
votes
5
replies
668
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 6 months ago by
Rebekah
• 0
50 results • Page
1 of 1
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Replies
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Answer: Remove duplicates of colData in TreeSummarizedExperiment
by
Michael Love
40k
Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…
Comment: DataFrame Construction With Non-standard Column
by
James W. MacDonald
63k
Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …
Comment: DeSeq2 design fails (full model matrix is less than full rank)
by
Basti
▴ 720
As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…
Votes
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Answer: DataFrame Construction With Non-standard Column
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
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