Entering edit mode
Hello,
I am wondering if there is any way I can use normalized counts in DESeq2. For context, access to the RNA-seq data I need on TCGA is restricted, so obtaining the raw files will take a while. In the mean time, I want to perform exploratory analysis and see how the data looks. I understand that raw files are the standard for publishing.
Thank you!
Also, just to add, there are many dozens of posts on this topic of DESeq2 applied to TCGA counts, normalized or other. Recommend google search with
site:support.bioconductor.org