Cannot install GO.db and org.Hs.eg.db
0
0
Entering edit mode
Gabriel • 0
@d3c85dbb
Last seen 3 hours ago
United Kingdom

I can install other packages in Bioconductor, but not GO.db and org.Hs.eg.db. It always fails at lazy loading but it doesn't state why. I have tried uninstalling and reinstalling R, Rstudio, Bioconductor, and restarting my computer, R session.

> BiocManager::install('org.Hs.eg.db')

trying URL 'https://bioconductor.org/packages/3.20/data/annotation/src/contrib/org.Hs.eg.db_3.20.0.tar.gz'
Content type 'application/x-gzip' length 98233708 bytes (93.7 MB)
downloaded 93.7 MB

* installing *source* package 'org.Hs.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
package 'IRanges' was built under R version 4.4.2 
ERROR: lazy loading failed for package 'org.Hs.eg.db'
* removing 'C:/Users/gabri/R/win-library/4.4/org.Hs.eg.db'


> session_info()

R version 4.4.1 (2024-06-14 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26100)

Matrix products: default


locale:
[1] LC_COLLATE=English_Singapore.utf8  LC_CTYPE=English_Singapore.utf8   
[3] LC_MONETARY=English_Singapore.utf8 LC_NUMERIC=C                      
[5] LC_TIME=English_Singapore.utf8    

time zone: Asia/Singapore
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] BiocManager_1.30.25 compiler_4.4.1      tools_4.4.1
Install • 30 views
ADD COMMENT
0
Entering edit mode

The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, unable to update packages path: C:/Program Files (x86)/R/R-4.4.1/library packages: boot, cluster, foreign, MASS, Matrix, nlme, survival Warning message: In install.packages(...) : installation of package 'org.Hs.eg.db' had non-zero exit status

ADD REPLY

Login before adding your answer.

Traffic: 631 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6