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Install
•
reset
0
votes
4
replies
213
views
DNABarcodes-Installation Issue
DNABarcodes
Install
6 weeks ago
nk130
• 0
0
votes
6
replies
2.0k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 4 months ago by
ATpoint
★ 3.9k • written 15 months ago by
laujihen
• 0
0
votes
0
replies
376
views
Version map cannot be validated - not mapping to new bioconductor website
Install
4 months ago
Alexander
• 0
2
votes
5
replies
779
views
SparseArray unable to install on Bioc 3.18
DESeq2
SummarizedExperiment
SparseArray
Install
DelayedArray
updated 4 months ago by
Michael Love
41k • written 4 months ago by
eg226
• 0
0
votes
7
replies
1.2k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install
instal
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
client.kashi
• 0
0
votes
1
reply
533
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 8 months ago by
Mike Smith
★ 6.4k • written 8 months ago by
Catia
• 0
3
votes
5
replies
981
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 8 months ago by
Vincent J. Carey, Jr.
6.7k • written 8 months ago by
Ndimensional
▴ 20
0
votes
2
replies
519
views
msa Installation failed - please help
Install
msa
9 months ago
Ido
• 0
1
vote
4
replies
5.9k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install
impute
updated 10 months ago by
yuzhijian
• 0 • written 2.1 years ago by
Aaron
• 0
0
votes
1
reply
2.9k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor
Install
updated 11 months ago by
ATpoint
★ 3.9k • written 11 months ago by
3305504122
• 0
0
votes
1
reply
622
views
error in install immunedeconv
Install
updated 12 months ago by
Lluís Revilla Sancho
▴ 730 • written 12 months ago by
fenglingao
• 0
1
vote
2
replies
779
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData
R
microbiomeutilities
Install
13 months ago
abhisek001
• 0
1
vote
1
reply
1.9k
views
packages not installing from sources the package which needs compilation
Install
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
무선
• 0
2
votes
4
replies
2.0k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 15 months ago by
abhisek001
• 0
1
vote
7
replies
1.3k
views
query regarding error in installation of "goseq" R bioconductor package
R
Bioconductor
Install
updated 15 months ago by
shepherl
3.8k • written 15 months ago by
abhisek001
• 0
1
vote
3
replies
5.1k
views
Not able to install packages in Bioconductor version '3.16'
Install
BiocManager
version3.16
updated 14 months ago by
shepherl
3.8k • written 16 months ago by
Tonmoya
• 0
5
votes
18
replies
7.2k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 12 weeks ago by
picasa1983
• 0 • written 2.1 years ago by
Victor
• 0
0
votes
2
replies
1.5k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2
Install
r
updated 17 months ago by
ATpoint
★ 3.9k • written 17 months ago by
Catherine
• 0
1
vote
20
replies
3.4k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2
Install
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
Hannah000111
• 0
1
vote
3
replies
968
views
I can't upgrade to version 3.15 in R
Install
updated 17 months ago by
Gordon Smyth
50k • written 17 months ago by
dsrlij
• 0
1
vote
1
reply
545
views
Downloading DESeq package manually
DESeq2
Install
updated 17 months ago by
Basti
▴ 750 • written 17 months ago by
JAcky
• 0
1
vote
1
reply
809
views
Unable to install "scruff" with BiocManager::install()
scruff
Install
ShortRead
updated 18 months ago by
shepherl
3.8k • written 18 months ago by
Jackson
• 0
0
votes
1
reply
1.0k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 21 months ago by
Hervé Pagès
16k • written 21 months ago by
Michel
• 0
2
votes
2
replies
921
views
rtracklayer S.h
install
22 months ago
gibran
• 0
0
votes
1
reply
1.1k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 22 months ago by
shepherl
3.8k • written 22 months ago by
eruan1
• 0
0
votes
2
replies
2.6k
views
non-zero exit status when trying to install a package
Install
22 months ago
BioC123
• 0
1
vote
3
replies
1.1k
views
Bioconductor installation error
Install
updated 23 months ago by
Helena
• 0 • written 23 months ago by
Cody
▴ 10
0
votes
2
replies
1.2k
views
Installation problems
Install
updated 23 months ago by
shepherl
3.8k • written 23 months ago by
laiajulianamu
• 0
0
votes
2
replies
882
views
Forking a package/install from source
install
package
fork
bugfix
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
Jeff
• 0
0
votes
2
replies
1.8k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub
Install
updated 24 months ago by
shepherl
3.8k • written 24 months ago by
nhaus
▴ 10
2
votes
1
reply
3.6k
views
Bioconductor Package Installation
install
TxDb.Hsapiens.UCSC.hg38.knownGene
2.0 years ago
Theresa
▴ 20
1
vote
2
replies
776
views
How to install R package from GitHub
Install
github
updated 2.0 years ago by
shepherl
3.8k • written 2.0 years ago by
Padam
• 0
0
votes
3
replies
1.2k
views
Warning messages during intallation of XCMS
xcms
Install
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
Fanny-shufan
• 0
0
votes
3
replies
1.7k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install
gpart
renv
updated 2.1 years ago by
Bert
• 0 • written 2.1 years ago by
matt.shenton
• 0
3
votes
5
replies
9.7k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter
Install
2.1 years ago
czan
▴ 10
4
votes
2
replies
3.9k
views
Install package without updating dependent package
Install
AnnotationForge
2.3 years ago
亮
• 0
5
votes
4
replies
2.5k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.3 years ago
RobKo
▴ 10
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install
3.13
affyQCReport
updated 2.4 years ago by
Miguel
▴ 10 • written 2.4 years ago by
lsmatott
• 0
0
votes
2
replies
1.3k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install
Bioconductor
DESeq2
2.4 years ago
ladypurrsia
▴ 10
2
votes
4
replies
2.5k
views
BiocManager::install() does not work anymore
Install
PackageType
updated 2.4 years ago by
shepherl
3.8k • written 2.4 years ago by
Julie
• 0
0
votes
1
reply
960
views
install GenomicFeatures fail
GenomicFeatures
install
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
soda
▴ 80
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install
VariantAnnotation
Bioconductor
chromVAR
updated 2.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.6 years ago by
Hannah
• 0
1
vote
1
reply
922
views
simplifyEnrichment install error
package
Rversion
Install
simplifyEnrichment
updated 2.9 years ago by
shepherl
3.8k • written 2.9 years ago by
ch_el
▴ 10
0
votes
2
replies
1.2k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error
DESeq2
Install
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Mick
• 0
1
vote
4
replies
1.4k
views
Failing to install DEP package. Some strange error.
R
Bioconductor
Install
DEP
3.0 years ago
tpm
• 0
2
votes
1
reply
791
views
Problem with pd.hta.2.0 package installation
Install
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
croft.carys
• 0
0
votes
1
reply
858
views
error during installation of 'DEseq2' package
DESeq2
Install
updated 3.0 years ago by
Hervé Pagès
16k • written 3.1 years ago by
su
• 0
0
votes
1
reply
2.0k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager
Install
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
saadmurtazakhan
▴ 10
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install
GO.db
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
Enrico
• 0
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
Khai-Chuong
• 0
50 results • Page
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Answer: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
If you include `0+` in the model formula, then the order of the batch and treatment factors in the model becomes important. You need `0+gro…
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
James W. MacDonald
65k
The main goal here is to map human gene symbols to something else, which you can use the `Orthology.eg.db` package to do. You could also us…
Comment: How can I compute AIC for MAST hurdle model fitted in the whole dataset?
by
rproendo
▴ 20
Hi OP, checking in to see if you found a solution to this issue. I'm also interested in using AICs to evaluate model fits in MAST.
Comment: padj-based gradient scale from barplot (clusterProfiler results) does not work p
by
Eva
▴ 10
Oh god, it is right, how I didn't realise before. I got confused with the scientific format of the numbers and I was in a loop for nothing.…
Comment: Downloading count matrix for full recount3 dataset
by
Leonardo Collado Torres
★ 1.0k
AFAIK it's not.
Votes
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
DESeq2 design with multiple factors
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