Showing : Install • reset
0
votes
6
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1.6k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 18 days ago by ★ 3.6k • written 12 months ago by • 0
0
votes
0
replies
102
views
Version map cannot be validated - not mapping to new bioconductor website
Install
22 days ago Alexander • 0
2
votes
5
replies
352
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 27 days ago by 41k • written 28 days ago by • 0
0
votes
7
replies
397
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 5 weeks ago by 64k • written 5 weeks ago by • 0
0
votes
1
reply
347
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 4 months ago by ★ 6.2k • written 4 months ago by • 0
3
votes
5
replies
653
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 4 months ago by 6.7k • written 4 months ago by ▴ 20
0
votes
2
replies
398
views
msa Installation failed - please help
Install msa
6 months ago Ido • 0
1
vote
4
replies
5.3k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 7 months ago by • 0 • written 22 months ago by • 0
0
votes
1
reply
2.2k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 7 months ago by ★ 3.6k • written 7 months ago by • 0
0
votes
1
reply
395
views
error in install immunedeconv
Install
updated 8 months ago by ▴ 720 • written 8 months ago by • 0
1
vote
2
replies
611
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
9 months ago abhisek001 • 0
1
vote
1
reply
1.6k
views
packages not installing from sources the package which needs compilation
Install
updated 11 months ago by 64k • written 11 months ago by • 0
2
votes
4
replies
1.6k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 12 months ago by • 0
1
vote
7
replies
1.0k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 12 months ago by 3.6k • written 12 months ago by • 0
1
vote
3
replies
4.5k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 11 months ago by 3.6k • written 12 months ago by • 0
4
votes
17
replies
6.5k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 12 months ago by 41k • written 22 months ago by • 0
0
votes
2
replies
1.2k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 13 months ago by ★ 3.6k • written 13 months ago by • 0
1
vote
20
replies
2.8k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 13 months ago by 64k • written 13 months ago by • 0
1
vote
3
replies
804
views
I can't upgrade to version 3.15 in R
Install
updated 14 months ago by 49k • written 14 months ago by • 0
1
vote
1
reply
432
views
Downloading DESeq package manually
DESeq2 Install
updated 14 months ago by ▴ 740 • written 14 months ago by • 0
1
vote
1
reply
632
views
Unable to install "scruff" with BiocManager::install()
scruff Install ShortRead
updated 15 months ago by 3.6k • written 15 months ago by • 0
0
votes
1
reply
878
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 18 months ago by 16k • written 18 months ago by • 0
2
votes
2
replies
802
views
rtracklayer S.h
install
19 months ago • updated 18 months ago gibran • 0
0
votes
1
reply
946
views
trouble installing DESeq2
install packages R DESeq2
updated 19 months ago by 3.6k • written 19 months ago by • 0
0
votes
2
replies
2.4k
views
non-zero exit status when trying to install a package
Install
19 months ago BioC123 • 0
1
vote
3
replies
952
views
Bioconductor installation error
Install
updated 19 months ago by • 0 • written 19 months ago by ▴ 10
0
votes
2
replies
1.1k
views
Installation problems
Install
updated 19 months ago by 3.6k • written 19 months ago by • 0
0
votes
2
replies
803
views
Forking a package/install from source
install package fork bugfix
updated 20 months ago by 64k • written 20 months ago by • 0
0
votes
2
replies
1.6k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 20 months ago by 3.6k • written 20 months ago by • 0
2
votes
1
reply
3.2k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
21 months ago Theresa ▴ 20
1
vote
2
replies
693
views
How to install R package from GitHub
Install github
updated 21 months ago by 3.6k • written 21 months ago by • 0
0
votes
3
replies
1.1k
views
Warning messages during intallation of XCMS
xcms Install
updated 21 months ago by 64k • written 21 months ago by • 0
0
votes
3
replies
1.6k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 21 months ago by • 0 • written 22 months ago by • 0
3
votes
5
replies
8.4k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
21 months ago czan ▴ 10
3
votes
2
replies
3.5k
views
Install package without updating dependent package
Install AnnotationForge
24 months ago 亮 • 0
5
votes
4
replies
2.1k
views
XVector installation fails because zlib.h is not found
XVector docker Install
2.0 years ago RobKo ▴ 10
0
votes
3
replies
1.6k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.1 years ago by ▴ 10 • written 2.1 years ago by • 0
0
votes
2
replies
1.2k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
2.1 years ago ladypurrsia ▴ 10
2
votes
4
replies
2.2k
views
BiocManager::install() does not work anymore
Install PackageType
updated 2.2 years ago by 3.6k • written 2.2 years ago by • 0
0
votes
1
reply
852
views
install GenomicFeatures fail
GenomicFeatures install
updated 2.3 years ago by 64k • written 2.3 years ago by ▴ 80
0
votes
5
replies
1.1k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 2.3 years ago by 6.7k • written 2.3 years ago by • 0
1
vote
1
reply
812
views
simplifyEnrichment install error
package Rversion Install simplifyEnrichment
updated 2.6 years ago by 3.6k • written 2.6 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 2.7 years ago by 64k • written 2.7 years ago by • 0
1
vote
4
replies
1.3k
views
Failing to install DEP package. Some strange error.
R Bioconductor Install DEP
2.7 years ago tpm • 0
2
votes
1
reply
699
views
Problem with pd.hta.2.0 package installation
Install
updated 2.7 years ago by 64k • written 2.7 years ago by • 0
0
votes
1
reply
773
views
error during installation of 'DEseq2' package
DESeq2 Install
updated 2.8 years ago by 16k • written 2.8 years ago by • 0
0
votes
1
reply
1.9k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 2.9 years ago by 64k • written 2.9 years ago by ▴ 10
0
votes
4
replies
1.2k
views
GO.db package can't be installed
install GO.db
updated 2.9 years ago by 25k • written 2.9 years ago by • 0
0
votes
1
reply
1.6k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor docker Install
updated 3.0 years ago by 25k • written 3.0 years ago by • 0
0
votes
2
replies
1.4k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck Install martini
3.0 years ago hector.climente • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: WGCNA documentation not available by James W. MacDonald 64k
Although people sometimes ask questions about WGCNA on this support site, it's not a Bioconductor package and therefore off-topic. Peter La…
Comment: ATACseqQC shiftGAlignmentsList() problem by Ou, Jianhong ★ 1.3k
try: `gal1 <- shiftGAlignmentsList(gal, outbam='3-AL1_Tn5_shift.bam')`. I will try to figure out why the memory is so high.
Comment: ATACseqQC shiftGAlignmentsList() problem by jfmay • 0
Thanks for your response. The version of ATACseqQC I'm using is 1.26.0. I tried to set bigFile=TRUE. The resulting object *gal1* still ends…
Answer: biomaRt_getBM_Failed to collect lazy table by James W. MacDonald 64k
That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…
Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0
I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…
Votes
Answer: ScRNAseq analysis scran :: quickcluster Error
Comment: Ensembl down???
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
Comment: Ensembl down???
Answer: SingleR annotation of several slots/patients
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