library org.Hs.eg.db failing to install
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Sophia • 0
@b5e60499
Last seen 4 days ago
United States

Every time I try to install Org.Hs.eg.db, i get this error- ERROR: lazy loading failed for package 'org.Hs.eg.db' and I'm not sure what to do about it. Does anyone have any advice?


BiocManager::install("org.Hs.eg.db")
org.Hs.eg.db • 205 views
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@james-w-macdonald-5106
Last seen 37 minutes ago
United States

It should just install.

> library(BiocManager)
Bioconductor version 3.20
  (BiocManager 1.30.25), R 4.4.1
  (2024-06-14 ucrt)
Warning message:
package 'BiocManager' was built under R version 4.4.2 
> install("org.Hs.eg.db", force = TRUE)
'getOption("repos")' replaces
Bioconductor standard repositories,
see 'help("repositories", package =
"BiocManager")' for details.
Replacement repositories:
    CRAN: https://cran.rstudio.org
Bioconductor version 3.20
  (BiocManager 1.30.25), R 4.4.1
  (2024-06-14 ucrt)
Installing package(s) 'org.Hs.eg.db'
installing the source package 'org.Hs.eg.db'

trying URL 'https://bioconductor.org/packages/3.20/data/annotation/src/contrib/org.Hs.eg.db_3.20.0.tar.gz'
Content type 'application/x-gzip' length 98233708 bytes (93.7 MB)
downloaded 93.7 MB

* installing *source* package 'org.Hs.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
package 'IRanges' was built under R version 4.4.2 
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Warning: package 'IRanges' was built under R version 4.4.2
** testing if installed package can be loaded from final location
Warning: package 'IRanges' was built under R version 4.4.2
** testing if installed package keeps a record of temporary installation path
* DONE (org.Hs.eg.db)

The downloaded source packages are in
    'C:\Users\jmacdon\AppData\Local\Temp\Rtmp67HIvp\downloaded_packages'

You might have something that gets loaded into the .GlobalEnv that is affecting things, so you could start R with the --vanilla flag for a clean environment and then try installing.

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