Entering edit mode
I could not get any result from getQC(RGset.raw)
library(minfi)
rawSet = read.metharray.exp(base=idatPath, targets=samp, force=TRUE, verbose=T)
rawSet@annotation <- c(array = "IlluminaHumanMethylationMSA", annotation = "ilm10a1.hg38")
RGset.raw <- preprocessRaw(rawSet)
qc<-getQC(RGset.raw)
mMed uMed
<numeric> <numeric>
209001580025_R01C01 NA NA
209001580026_R02C01 NA NA
sessionInfo( )
---
R version 4.5.0 (2025-04-11)
Platform: x86_64-suse-linux-gnu
Running under: SUSE Linux Enterprise Server 15 SP4
minfi_1.55.0 bumphunter_1.51.0
[3] locfit_1.5-9.12 iterators_1.0.14
[5] foreach_1.5.2 Biostrings_2.77.1