Hi

I had a doubt. I'm trying to download specific databases the .gmt files from Broad Institute for Mouse genes.

For more context, I initially had genes in the format of Chinese Hamster which I had to map to Mouse, and I was not able to map all the genes using BioMart because some genes were in the format of LOC. Specifically for those genes I used a code to fetch it from their accession IDs and used BLAST for that purpose.

I'm worried that all the gene names in the expression file would not match the .gmt gene set database files.

Can anybody suggest me anything please?

Thank you