Just wondering if anyone knew of code to take a ucsc Genome Browser tab-delimited file obtained via download and converting it to GFF3 format? Thanks, Sean

hmmm http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1088304 refers to psl2gff which can be found at http://lgsun.grc.nia.nih.gov/geneindex4/download.html -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Sean Davis Sent: Monday, August 08, 2005 5:45 AM To: Bioconductor Subject: [BioC] GFF3 format from ucsc Just wondering if anyone knew of code to take a ucsc Genome Browser tab-delimited file obtained via download and converting it to GFF3 format? Thanks, Sean _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor

Thanks, Malcolm. Looks good--I'll give it a whirl. Sean 1On 8/15/05 6:52 PM, "Cook, Malcolm" <mec at="" stowers-institute.org=""> wrote: > hmmm > > http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1088304 refers > to psl2gff which can be found at > http://lgsun.grc.nia.nih.gov/geneindex4/download.html > > > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Sean Davis > Sent: Monday, August 08, 2005 5:45 AM > To: Bioconductor > Subject: [BioC] GFF3 format from ucsc > > > Just wondering if anyone knew of code to take a ucsc Genome Browser > tab-delimited file obtained via download and converting it to GFF3 > format? > > Thanks, > Sean > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >