Entering edit mode
Vishal Thapar
▴
90
@vishal-thapar-3427
Last seen 10.3 years ago
Dear Listers,
I had a small query. I am working with A. Thaliana and after some
initial
analysis I have a list of genes (2000 or so). I want to now classify
them
into GO categories. I know there are lots of web based tools to do
this but
I want to do this in R. Has anyone done this before ? (I am sure,
someone
has, or so I hope) I tried to look around but I didn't find any whole
genome
annotation package like "org.Hs.eg.db" for Arabidopsis Thaliana. I
found
this on BioC
http://bioconductor.org/packages/2.2/Arabidopsis_thaliana.html
But it does not seem like I can use this for my GO term analysis. Does
anyone know of a package in R that can be used for Arabidopsis? Any
pointers
and help would be greatly appreciated.
Thanks,
Sincerely,
Vishal
--
Vishal Thapar, Ph.D.
Post Doctoral Researcher
Cold Spring Harbor Lab
Williams #5, 1 Bungtown Road
Cold Spring Harbor, NY - 11724
[[alternative HTML version deleted]]
Hi Everyone,
How to pathway analysis of Arabidopsis thaliana organism using pathview.
Data preparation for input and analysis.
thank you