Question: network.Rdata file into TOM file error
gravatar for m.azhar
14 months ago by
m.azhar0 wrote:

I am using WGCNA to build coexpression interaction network using lncRNA and mRNA consist of 62K probes so I used a sever which is command based with 64 GB RAM and blockwise module =8000 approach to calculate the modules and netwro.Rdata file.

Now I want to export this network.Rata file to cytoscape and visnet using the WGCNA tutrioal method it says that I have to calculate TOM again ? i dont know about this can i skip this step .or is it nesscary and when I do TOM i get this for long time 


> TOM=TOMsimilarityFromExpr(datExpr0, power =6);
TOM calculation: adjacency..
adjacency: replaceMissing: 0
..will use 23 parallel threads.
 Fraction of slow calculations: 0.000000
..matrix multiplication..

and not improvement 

can any body help me what is this and what is the simplest way to converting newtwork.Rdata file into cyctoscape exportable file

ADD COMMENTlink written 14 months ago by m.azhar0
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