Problem installing DeepBlueR
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Entering edit mode
@ogianatiempo-12751
Last seen 5.7 years ago

Hi, I'm trying to install DeepBlueR and encountering an error. Any help will be apreciated!

Octavio

 

Installation output:

> biocLite("DeepBlueR")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.3 (2017-03-06).
Installing package(s) ‘DeepBlueR’
probando la URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/DeepBlueR_1.0.11.tar.gz'
Content type 'application/x-gzip' length 1713413 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

* installing *source* package ‘DeepBlueR’ ...
** R
** demo
** inst
** preparing package for lazy loading
Called method: deepblue_list_column_types
Reported status was: okay
status 
 "417" 
Error in xml.rpc(deepblue_options("url"), "info", id, user_key) : 
  Problems
Error : unable to load R code in package ‘DeepBlueR’
ERROR: lazy loading failed for package ‘DeepBlueR’
* removing ‘/home/octavio/R/x86_64-pc-linux-gnu-library/3.3/DeepBlueR’

The downloaded source packages are in
	‘/tmp/Rtmpu5GXHi/downloaded_packages’
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
  installation of package ‘DeepBlueR’ had non-zero exit status

And sessionInfo(): 

> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.2 LTS

locale:
 [1] LC_CTYPE=es_AR.UTF-8       LC_NUMERIC=C               LC_TIME=es_AR.UTF-8       
 [4] LC_COLLATE=es_AR.UTF-8     LC_MONETARY=es_AR.UTF-8    LC_MESSAGES=es_AR.UTF-8   
 [7] LC_PAPER=es_AR.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=es_AR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.24.0

loaded via a namespace (and not attached):
[1] tools_3.3.3
DeepBlueR • 680 views
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0
Entering edit mode
@felipealbrecht-12801
Last seen 5.7 years ago

Hello, sorry for the delay, I am not used with the BioConductor QA.

The Error 417 means that it has a problem connecting with the DeepBlue Server. So, it is a server side error.

I suggest you try again few minutes and hours later (you can install and use right now).

If the problem persist, please, contact us at deepblue@mpi-inf.mpg.de

Thank you,

Felipe Albrecht

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