Dear fellows,
firstly i identified degs using LIMMA dataset provide 1065 probeids with relevant info. from which i select 260 genes (no specific reasons ) 105 was up-reg and 155 was down-reg then i do func. enrichment using genecodis3 where i submit 260 genes and i got around 90 GO molecular func id and 11 kegg pathways. then i do mi RNA analysis , 4 miRNA was predicted.
Now i want to do tf analysis from JASPAR db i searched a lot of tutorial on that but i didn’t get the point what i have to enter as input my 260 gene list information or the data which i retrieved from mirna analysis, kindly tell me the procedure of using jaspar or send a link of of jaspar tutorial which have all the solve queries step by step OR recommend any other tool which do tf analysis
