Hello!
I'm having trouble installing the package org.Hs.eg.db, and I don't know what is wrong! It downloads the package, but since it can't install it the file is deleted.
Here is what I get
> source("https://bioconductor.org/biocLite.R") Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help > biocLite("org.Hs.eg.db") BioC_mirror: https://bioconductor.org Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.3 (2017-03-06). Installing package(s) ‘org.Hs.eg.db’ installing the source package ‘org.Hs.eg.db’ tentando a URL 'https://bioconductor.org/packages/3.4/data/annotation/src/contrib/org.Hs.eg.db_3.4.0.tar.gz' Content type 'application/x-gzip' length 69557350 bytes (66.3 MB) downloaded 66.3 MB * installing *source* package 'org.Hs.eg.db' ... Warning in file(file, if (append) "a" else "w") : cannot open file 'C:/Users/Farmacia/Documents/R/win-library/3.3/org.Hs.eg.db/DESCRIPTION': No such file or directory Error in file(file, if (append) "a" else "w") : não é possÃvel abrir a conexão ERROR: installing package DESCRIPTION failed for package 'org.Hs.eg.db' * removing 'C:/Users/Farmácia/Documents/R/win-library/3.3/org.Hs.eg.db' The downloaded source packages are in ‘C:\Users\Farmácia\AppData\Local\Temp\Rtmp0mX6LX\downloaded_packages’ Warning messages: 1: execução do comando '"C:/PROGRA~1/R/R-33~1.3/bin/i386/R" CMD INSTALL -l "C:\Users\Farmácia\Documents\R\win-library\3.3" C:\Users\FARMCI~1\AppData\Local\Temp\Rtmp0mX6LX/downloaded_packages/org.Hs.eg.db_3.4.0.tar.gz' teve status 1 2: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘org.Hs.eg.db’ had non-zero exit status > sessionInfo() R version 3.3.3 (2017-03-06) Platform: i386-w64-mingw32/i386 (32-bit) Running under: Windows 8.1 x64 (build 9600) locale: [1] LC_COLLATE=Portuguese_Brazil.1252 LC_CTYPE=Portuguese_Brazil.1252 [3] LC_MONETARY=Portuguese_Brazil.1252 LC_NUMERIC=C [5] LC_TIME=Portuguese_Brazil.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] installr_0.18.0 BiocInstaller_1.24.0 loaded via a namespace (and not attached): [1] magrittr_1.5 tools_3.3.3 stringi_1.1.5 stringr_1.2.0
There are some parts of it in portuguese, where it says it cannot open connection (não é possÃvel abrir a conexão - it has this weird characters because of portuguese accentuation) and that the command execution had status 1 (execução do comando '"C:/PROGRA~1/R/R-33~1.3/bin/i386/R" CMD INSTALL -l "C:\Users\Farmácia\Documents\R\win-library\3.3" C:\Users\FARMCI~1\AppData\Local\Temp\Rtmp0mX6LX/downloaded_packages/org.Hs.eg.db_3.4.0.tar.gz' teve status 1 )
How can I fix this?
Thanks!