Hi,
I usually use this script to get the GO IDs but I'm getting the error below since yesterday.
library("biomaRt")
listMarts(host="plants.ensembl.org")
m <- useMart("plants_mart", host="plants.ensembl.org");
listDatasets(ensembl)
ensembl= useDataset("athaliana_eg_gene", mart=ensembl)
go <- getBM(attributes=c("go_accession", "tair_locus", "go_namespace_1003"), mart=ensembl)
Error in getBM(attributes = c("go_accession", "tair_locus", "go_namespace_1003"), :
Invalid attribute(s): go_accession, go_namespace_1003
Please use the function 'listAttributes' to get valid attribute names
Thanks a lot.
Thanks a lot.