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Question: Genomicfeatures- Error: Image not found, dynamic loading, reputed error???
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gravatar for anupamsingh194
3 months ago by
anupamsingh1940 wrote:

Hi,

I am getting the following error while installing GenomicFeatures, and am wondering if this is a reported error?  

Error: package or namespace load failed for ‘GenomicFeatures’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rtracklayer/libs/rtracklayer.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rtracklayer/libs/rtracklayer.so, 6): Library not loaded: /usr/local/opt/openssl/lib/libssl.1.0.0.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rtracklayer/libs/rtracklayer.so
  Reason: image not found

sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.4

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
[1] AnnotationDbi_1.38.0 Biobase_2.36.2       GenomicRanges_1.28.2
[4] GenomeInfoDb_1.12.0  IRanges_2.10.1       S4Vectors_0.14.1    
[7] BiocGenerics_0.22.0 

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.10               XVector_0.16.0            
 [3] GenomicAlignments_1.12.1   zlibbioc_1.22.0           
 [5] BiocParallel_1.10.1        lattice_0.20-35           
 [7] tools_3.4.0                grid_3.4.0                
 [9] SummarizedExperiment_1.6.1 DBI_0.6-1                 
[11] matrixStats_0.52.2         digest_0.6.12             
[13] Matrix_1.2-10              GenomeInfoDbData_0.99.0   
[15] bitops_1.0-6               RCurl_1.95-4.8            
[17] biomaRt_2.32.0             memoise_1.1.0             
[19] RSQLite_1.1-2              DelayedArray_0.2.2        
[21] compiler_3.4.0             BiocInstaller_1.26.0      
[23] Biostrings_2.44.0          Rsamtools_1.28.0          
[25] XML_3.98-1.7      

ADD COMMENTlink modified 3 months ago by Michael Lawrence9.4k • written 3 months ago by anupamsingh1940
0
gravatar for Michael Lawrence
3 months ago by
United States
Michael Lawrence9.4k wrote:

Right now you'll need to install rtracklayer from source, or install openssl from homebrew. We're working on getting the binary to work out of the box.

ADD COMMENTlink written 3 months ago by Michael Lawrence9.4k
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