Genomicfeatures- Error: Image not found, dynamic loading, reputed error???
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@anupamsingh194-13080
Last seen 7.0 years ago

Hi,

I am getting the following error while installing GenomicFeatures, and am wondering if this is a reported error?  

Error: package or namespace load failed for ‘GenomicFeatures’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rtracklayer/libs/rtracklayer.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rtracklayer/libs/rtracklayer.so, 6): Library not loaded: /usr/local/opt/openssl/lib/libssl.1.0.0.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rtracklayer/libs/rtracklayer.so
  Reason: image not found

sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.4

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
[1] AnnotationDbi_1.38.0 Biobase_2.36.2       GenomicRanges_1.28.2
[4] GenomeInfoDb_1.12.0  IRanges_2.10.1       S4Vectors_0.14.1    
[7] BiocGenerics_0.22.0 

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.10               XVector_0.16.0            
 [3] GenomicAlignments_1.12.1   zlibbioc_1.22.0           
 [5] BiocParallel_1.10.1        lattice_0.20-35           
 [7] tools_3.4.0                grid_3.4.0                
 [9] SummarizedExperiment_1.6.1 DBI_0.6-1                 
[11] matrixStats_0.52.2         digest_0.6.12             
[13] Matrix_1.2-10              GenomeInfoDbData_0.99.0   
[15] bitops_1.0-6               RCurl_1.95-4.8            
[17] biomaRt_2.32.0             memoise_1.1.0             
[19] RSQLite_1.1-2              DelayedArray_0.2.2        
[21] compiler_3.4.0             BiocInstaller_1.26.0      
[23] Biostrings_2.44.0          Rsamtools_1.28.0          
[25] XML_3.98-1.7      

software error genomicfeatures • 1.1k views
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Entering edit mode
@michael-lawrence-3846
Last seen 2.5 years ago
United States

Right now you'll need to install rtracklayer from source, or install openssl from homebrew. We're working on getting the binary to work out of the box.

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