Hello,
I have an issue when trying this:
> idMapper <- IDMapper("9606")
checking for biomart access...
does 'http://www.biomart.org' respond?
creating ensembl mart
Space required after the Public Identifier
SystemLiteral " or ' expected
SYSTEM or PUBLIC, the URI is missing
Opening and ending tag mismatch: hr line 7 and body
Opening and ending tag mismatch: body line 4 and html
Premature end of data in tag html line 2
Error: 1: Space required after the Public Identifier
2: SystemLiteral " or ' expected
3: SYSTEM or PUBLIC, the URI is missing
4: Opening and ending tag mismatch: hr line 7 and body
5: Opening and ending tag mismatch: body line 4 and html
6: Premature end of data in tag html line 2
---
This was used to work. Any help, please?
Thanks in advance.
Best.-
--
> sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.5 LTS
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.0
LAPACK: /usr/lib/lapack/liblapack.so.3.0
locale:
[1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C LC_TIME=es_ES.UTF-8 LC_COLLATE=es_ES.UTF-8 LC_MONETARY=es_ES.UTF-8
[6] LC_MESSAGES=es_ES.UTF-8 LC_PAPER=es_ES.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] reactome.db_1.52.1 PSICQUIC_1.6.0 httr_1.2.1 biomaRt_2.26.1 plyr_1.8.4 GeneAnswers_2.10.0
[7] RColorBrewer_1.1-2 Heatplus_2.14.0 MASS_7.3-47 annotate_1.46.1 XML_3.98-1.7 RCurl_1.95-4.8
[13] bitops_1.0-6 igraph_1.0.1 org.Hs.eg.db_3.1.2 RSQLite_1.1-2 AnnotationDbi_1.30.1 GenomeInfoDb_1.4.3
[19] IRanges_2.2.9 S4Vectors_0.6.6 Biobase_2.28.0 BiocGenerics_0.14.0
loaded via a namespace (and not attached):
[1] graph_1.46.0 Rcpp_0.12.11 magrittr_1.5 xtable_1.8-2 R6_2.2.1 tools_3.4.0 DBI_0.6-1
[8] RBGL_1.44.0 digest_0.6.12 codetools_0.2-15 memoise_1.1.0 downloader_0.4 compiler_3.4.0
