I'm trying to ugrade Bioconductor 3.5 to 3.5 using:
biocLite("BiocUpgrade")
Error: Bioconductor version 3.4 cannot be upgraded with R version 3.4.0
Why? I have R 3.4.0
sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.5 LTS
Matrix products: default
BLAS: /usr/lib/atlas-base/atlas/libblas.so.3.0
LAPACK: /usr/lib/lapack/liblapack.so.3.0
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.24.0
loaded via a namespace (and not attached):
[1] compiler_3.4.0 tools_3.4.0 RCurl_1.95-4.8 h2o_3.10.4.6 jsonlite_1.5
[6] bitops_1.0-6
It was only necessary to remove the BiocInstaller package, not all R / all packages, but I'm glad you got it working.