Question: How to set the amount of RAM used for Package 'BCRANK' ?
0
gravatar for rezapanahi222
2.1 years ago by
rezapanahi2220 wrote:

Hello everyone

How to set the amount of RAM used for the package BCRANK

In step ( > BCRANKout <- bcrank(fastaFile, restarts=25, use.P1=TRUE, use.P2=TRUE))?

 

I want to give it the highest amount of RAM to increase the speed of the analysis

Thanks

chipseq bcrank • 293 views
ADD COMMENTlink modified 2.1 years ago by James W. MacDonald50k • written 2.1 years ago by rezapanahi2220
Answer: How to set the amount of RAM used for Package 'BCRANK' ?
0
gravatar for James W. MacDonald
2.1 years ago by
United States
James W. MacDonald50k wrote:

R by default uses as much RAM as it needs, so you can't specify the amount to use. Using more RAM probably wouldn't help anyway - I think you are really wanting to be able to use multiple cores to parallelize the computation, which could hypothetically speed things up. But this requires code to take advantage of multiple cores, and it doesn't appear that BCRANK can do this.

ADD COMMENTlink written 2.1 years ago by James W. MacDonald50k

Thanks for the help

What can I comment on , the output of this step would save file?

( > BCRANKout <- bcrank(fastaFile, restarts=25, use.P1=TRUE, use.P2=TRUE))?

 

 

ADD REPLYlink written 2.0 years ago by rezapanahi2220
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 257 users visited in the last hour