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Question: How to set the amount of RAM used for Package 'BCRANK' ?
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gravatar for rezapanahi222
4 months ago by
rezapanahi2220 wrote:

Hello everyone

How to set the amount of RAM used for the package BCRANK

In step ( > BCRANKout <- bcrank(fastaFile, restarts=25, use.P1=TRUE, use.P2=TRUE))?

 

I want to give it the highest amount of RAM to increase the speed of the analysis

Thanks

ADD COMMENTlink modified 4 months ago by James W. MacDonald45k • written 4 months ago by rezapanahi2220
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gravatar for James W. MacDonald
4 months ago by
United States
James W. MacDonald45k wrote:

R by default uses as much RAM as it needs, so you can't specify the amount to use. Using more RAM probably wouldn't help anyway - I think you are really wanting to be able to use multiple cores to parallelize the computation, which could hypothetically speed things up. But this requires code to take advantage of multiple cores, and it doesn't appear that BCRANK can do this.

ADD COMMENTlink written 4 months ago by James W. MacDonald45k

Thanks for the help

What can I comment on , the output of this step would save file?

( > BCRANKout <- bcrank(fastaFile, restarts=25, use.P1=TRUE, use.P2=TRUE))?

 

 

ADD REPLYlink written 4 months ago by rezapanahi2220
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