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Question: CummeRbund returns 0 genes
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gravatar for bhagyathimmappa
14 months ago by
bhagyathimmappa0 wrote:

When running readcufflinks it returns "0 sample". while building the database it does not give me any error but it is not working.

 

> cuff_data = readCufflinks('diff_out/')
> cuff_data
CuffSet instance with:
     0 samples
     0 genes
     0 isoforms
     0 TSS
     0 CDS
     0 promoters
     0 splicing
     0 relCDS
Warning message:
call dbDisconnect() when finished working with a connection
> cuff_data
CuffSet instance with:
     0 samples
     0 genes
     0 isoforms
     0 TSS
     0 CDS
     0 promoters
     0 splicing
     0 relCDS

R version 3.4.0

cuffdiff v2.2.1 (4237)

Please let me know what is wrong here.

Thanks

ADD COMMENTlink written 14 months ago by bhagyathimmappa0
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