Question

PCR bottleneck coefficient (PBC)

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C T ▴ 140

@c-t-5858

Last seen 11 months ago

United States

Is there a way to calculate the PBC1 and PBC2 following ENCODE standard https://www.encodeproject.org/data-standards/terms/#library?

I thought ChIPQC calculate these but I cannot find it?

chipqc • 2.0k views

ADD COMMENT • link updated 6.8 years ago by Rory Stark ★ 5.1k • written 6.8 years ago by C T ▴ 140

score 0 · Answer 1 · 2017-07-11

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Rory Stark ★ 5.1k

@rory-stark-5741

Last seen 8 days ago

Cambridge, UK

No, ChIPQC does not compute these metrics. It does compute FRiP (fraction of reads in peaks) and duplication rate (fraction of reads that map to the same location as another read)..

-Rory

ADD COMMENT • link 6.8 years ago Rory Stark ★ 5.1k