Question: PCR bottleneck coefficient (PBC)
0
gravatar for C T
2.0 years ago by
C T90
United States
C T90 wrote:

Is there a way to calculate the PBC1 and PBC2 following ENCODE standard https://www.encodeproject.org/data-standards/terms/#library?

I thought ChIPQC calculate these but I cannot find it?

chipqc • 833 views
ADD COMMENTlink modified 2.0 years ago by Rory Stark2.8k • written 2.0 years ago by C T90
Answer: PCR bottleneck coefficient (PBC)
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gravatar for Rory Stark
2.0 years ago by
Rory Stark2.8k
CRUK, Cambridge, UK
Rory Stark2.8k wrote:

No, ChIPQC does not compute these metrics. It does compute FRiP (fraction of reads in peaks) and duplication rate (fraction of reads that map to the same location as another read)..

-Rory

ADD COMMENTlink written 2.0 years ago by Rory Stark2.8k
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