Is there a way to calculate the PBC1 and PBC2 following ENCODE standard https://www.encodeproject.org/data-standards/terms/#library?
I thought ChIPQC calculate these but I cannot find it?
No, ChIPQC does not compute these metrics. It does compute FRiP (fraction of reads in peaks) and duplication rate (fraction of reads that map to the same location as another read)..
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