Hi Adam,
this does not look like a matchprobe-specific problem, rather one with
your R installation / configuration. Within the matchprobes package,
nowhere are those offending compiler options (-m32 -march=i386
-mtune=pentium4) mentioned, they seem to be picked up from somewhere
else.
I have no idea where from, though.
Did you compile R yourself, on the same machine as you are trying to
install the package? Are you perhaps using a precompiled distribution
of R?
Best wishes
Wolfgang
> I am using BioC 1.6 on Linux RH 2.4.20-31.9. I was trying to load a
probe library and it told me that I needed a newer matchprobes
library.
>
> Error: package 'matchprobes' 1.0.12 was found, but >= 1.0.20 is
required by 'zebrafishprobe'
>
> Upon downloading and trying to install the newer match probes I got
this error. I dont know wha this means. Any ideas?
>
>
> R CMD INSTALL -l /usr/lib/R/library ./matchprobes_1.0.22.tar.gz
> * Installing *source* package 'matchprobes' ...
> ** libs
> gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -g -pipe
-m32 -march=i386 -mtune=pentium4 -c main.c -o main.o
> cc1: invalid option `tune=pentium4'
> make: *** [main.o] Error 1
> ERROR: compilation failed for package 'matchprobes'
> ** Removing '/usr/lib/R/library/matchprobes'
> ** Restoring previous '/usr/lib/R/library/matchprobes'
>
-------------------------------------
Wolfgang Huber
European Bioinformatics Institute
European Molecular Biology Laboratory
Cambridge CB10 1SD
England
Phone: +44 1223 494642
Fax: +44 1223 494486
Http: www.ebi.ac.uk/huber
