Question

detecting of CNV in WGS/WES data

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Bogdan ▴ 670

@bogdan-2367

Last seen 13 months ago

Palo Alto, CA, USA

Dear all,

please, could you advise, which R/BioC packages would you recommend for CNV analysis of TUMOR WGS / WES data (where a matching GERMLINE sample is not available). thank you,

-- bogdan

CNV WGS WES • 1.5k views

ADD COMMENT • link updated 7.3 years ago by Haiying.Kong ▴ 110 • written 7.4 years ago by Bogdan ▴ 670

score 2 · Answer 1 · 2017-07-20

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Haiying.Kong ▴ 110

@haiyingkong-9254

Last seen 5.6 years ago

Germany

I used cn.mops for WES.

ADD COMMENT • link 7.3 years ago Haiying.Kong ▴ 110

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Thanks Haiying. I've started using cnMOPS for WES analysis, too ;)

ADD REPLY • link 7.3 years ago Bogdan ▴ 670