User: Bogdan

gravatar for Bogdan
Bogdan470
Reputation:
470
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Trusted
Location:
Palo Alto, CA, USA
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Google Scholar Page
Last seen:
21 hours ago
Joined:
10 years ago
Email:
t*****@gmail.com

Posts by Bogdan

<prev • 243 results • page 1 of 25 • next >
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Comment: C: about the runs with cn.mops
... Dear Gunter, thank you for your message and for confirmation. Yes, I thought that this may be the case, and we've used indeed the results from cnvs(). ...
written 5 days ago by Bogdan470
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Answer: A: about using the names of the rows and columns in ComplexHeatmap
... Continuing my previous email with an example : starting from the dataframe MAT and some annotations in DF/HA : library(ComplexHeatmap) library(circlize) set.seed(123) mat = cbind(rbind(matrix(rnorm(16, -1), 4), matrix(rnorm(32, 1), 8)), rbind(matrix(rnorm(24, 1), 4), matrix(rnorm(48, ...
written 7 days ago by Bogdan470
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about using the names of the rows and columns in ComplexHeatmap
... Dear all, after starting working with the package ComplexHeatmap, i would like to add a simple question (with my apologies if I missed the answer in the package documentation). The question is the following: shall we have numerical matrix/dataframe (with or without ROWNAMES or COLNAMES), is the O ...
complexheatmap written 7 days ago by Bogdan470
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Comment: C: an error on GRanges
... Dear Herve, as an solution for my question above, I am going to use the R code that you've suggested at :  https://support.bioconductor.org/p/100101/#100107 ; Many thanks again for your kind help !     ...
written 9 days ago by Bogdan470
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Comment: C: about setdiff() and meta-information in GRanges
... Dear Herve, many thanks for your help on this question. It is working very well now ;) ...
written 9 days ago by Bogdan470
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Comment: C: an error on GRanges
... Dear Herve, 'm happy to hear from you, and many thanks for time, help and suggestions. Will get back on this question, after a few more tests ;) ...
written 16 days ago by Bogdan470
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about setdiff() and meta-information in GRanges
... Dear all, please, could you advise, is there any way to keep the meta-information of a GRanges, during a setdiff() operation, with another GRanges. More precisely, shall we work with : > cnv_list GRanges object with 1081 ranges and 1 metadata column: seqnames ranges st ...
genomicranges granges written 16 days ago by Bogdan470 • updated 16 days ago by Hervé Pagès ♦♦ 12k
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an error on GRanges
... Dear all, I would appreciate your help on learning how to fix the following error ; thank you ! "Error: subscript is a NSBS object that is incompatible with the current subsetting operation" I am working with 2 Granges, let's call them "query" and "subject" (as shown below), and the purpose of the ...
granges written 16 days ago by Bogdan470
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Answer: A: about the runs with cn.mops
... Dear Gunter, please, it would be helpful, if I could have your insights on the following results. I have been running cnMOPS on TUMOR-GERMLINE sample, and for a particular case (on chr 11): -- cnvs() function gives the results (below), that contain a combination of CN1, CN3, and CN4 ...
written 18 days ago by Bogdan470
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Comment: C: about the runs with cn.mops
... Dear Gunter, thank you again ;) I would like to better understand the differences between the results from CNVS() versus the results from CNVR(), in the context of CNV calling on TUMOR-GERMLINE, and if you do not mind providing some insights on another question below please.   ...
written 23 days ago by Bogdan470

Latest awards to Bogdan

Popular Question 3 months ago, created a question with more than 1,000 views. For question about Gviz
Popular Question 7 months ago, created a question with more than 1,000 views. For gene symbols in Gviz
Supporter 7 months ago, voted at least 25 times.
Centurion 19 months ago, created 100 posts.

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