User: Bogdan

gravatar for Bogdan
Bogdan470
Reputation:
470
Status:
Trusted
Location:
Palo Alto, CA, USA
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Last seen:
5 hours ago
Joined:
9 years, 10 months ago
Email:
t*****@gmail.com

Posts by Bogdan

<prev • 226 results • page 1 of 23 • next >
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Comment: C: detecting of CNV in WGS/WES data
... Thanks Haiying. I've started using cnMOPS for WES analysis, too ;) ...
written 5 hours ago by Bogdan470
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detecting of CNV in WGS/WES data
... Dear all, please, could you advise, which R/BioC packages would you recommend for CNV analysis of TUMOR WGS / WES data (where a matching GERMLINE sample is not available).  thank you,   -- bogdan ...
cnv wes wgs written 3 days ago by Bogdan470 • updated 5 hours ago by Haiying.Kong80
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Comment: C: about reshaping a data frame
... Dear Haiying, thank you very much for suggestions and kind help ;) ...
written 16 days ago by Bogdan470
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Comment: C: using edgeR or limma for 5C data normalization
... Thank you Aaron, I will go again over diffHiC documentation ;) have a good week ;) ...
written 16 days ago by Bogdan470
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using edgeR or limma for 5C data normalization
... Dear all, please would you advise : could the normalization methods (TMM, etc) that are implemented in limma or edgeR (or DESeq2, or in other packages) be used for the normalization of 5C interaction data ? thanks,  -- bogdan   ...
limma edger deseq2 written 17 days ago by Bogdan470 • updated 17 days ago by Aaron Lun15k
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about reshaping a data frame
... Dear all, although it is a more general R question, if you do not mind having me asking the question on BioC list, as it relates to the packages maftools and ComplexHeatmap.   I would appreciate please a piece of help regarding the use of acast/dcast functions in reshape2 package (the output matri ...
complexheatmap maftools written 17 days ago by Bogdan470 • updated 17 days ago by Haiying.Kong80
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Comment: C: Error in GenomeInfoDb:::getDanglingSeqlevels
... Dear Herve, many thanks ;) it is working now. ...
written 22 days ago by Bogdan470
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Answer: A: Error in GenomeInfoDb:::getDanglingSeqlevels
... Dear Herve, many thanks for your detailed message and precious help ;). I will update my R code accordingly.  ...
written 22 days ago by Bogdan470
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Comment: C: Error in GenomeInfoDb:::getDanglingSeqlevels
... Dear Valerie, thank you very much for your help ;) ...
written 26 days ago by Bogdan470
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Error in GenomeInfoDb:::getDanglingSeqlevels
... Dear all, please could you advise on how I shall understand and how could I possibly fix the following error : I am using a R scripts that calls ggbio and the human chomosomes (chr1, chr2, etc ...), and it used to work well before R.3.4.0. On R.3.4.0, the error I am getting is below, and shall I fo ...
ggbio written 27 days ago by Bogdan470

Latest awards to Bogdan

Popular Question 7 weeks ago, created a question with more than 1,000 views. For question about Gviz
Popular Question 4 months ago, created a question with more than 1,000 views. For gene symbols in Gviz
Supporter 5 months ago, voted at least 25 times.
Centurion 17 months ago, created 100 posts.

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