generating an order ranked gene list
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@brunosaubamea-13693
Last seen 7.2 years ago

Dear bioconductors

Must be a very basic question but I'm unable to find how to generate an order ranked genelist to feed into gseKEGG function in ClusterProfiler.

I work on R and have a dataframe or matrix of gene names with associated FC values, pvalues, adjusted pvalues (among others).

Can someone help?

thanks in advance

bruno

gseKEGG order ranked gene list order rank • 4.1k views
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@james-w-macdonald-5106
Last seen 19 hours ago
United States

 You would have to first define what an 'order ranked genelist' might be. But I would imagine something like sort or order would be useful.

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@brunosaubamea-13693
Last seen 7.2 years ago

Yes it was that simple. Thank you

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