Question: rehh package for iHS
gravatar for amanda_maiorano
10 months ago by
amanda_maiorano0 wrote:

Hi everyone,

I am trying to use the package rehh to check selection signature. I've got some inappropriate results when I use the scan_hh function. So I tried to apply this function using the example dataset. You can see the results below. Any recommendation how to solve the problem?


> make.example.files()

> data(haplohh_cgu_bta12)

> res.scan<-scan_hh(haplohh_cgu_bta12)

> dim(res.scan)

[1] 1424    7

> head(res.scan)

         CHR POSITION    freq_A iHH_A iHH_D iES_Tang_et_al_2007 iES_Sabeti_et_al_2007

F1200140  12    79823 0.1500000    NA    NA                  NA                    NA

F1200150  12   125974 0.4071429    NA    NA                  NA                    NA

F1200170  12   175087 0.3571429    NA    NA                  NA                    NA

F1200180  12   219152 0.2214286    NA    NA                  NA                    NA

F1200190  12   256896 0.1750000    NA    NA                  NA                    NA

F1200210  12   316254 0.3892857    NA    NA                  NA                    NA

ADD COMMENTlink written 10 months ago by amanda_maiorano0
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