liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
0
0
Entering edit mode
@user-24088
Last seen 4.0 years ago
China/Beijing

I can get the results of liftOver when I run the commond in linux shell:

                        "liftOver input.bed hg38ToMm10.over.chain.gz out.bed unmap.bed"

My question is how can I get the unmap.bed(such as '#Partially deleted in new \ #Split in new \ #Deleted in new') when I use R-package liftOver(version:1.12.0)?

I have confirm that the '#Delete in new' will return a null GRanges and '#Split in new' will return a GRanges with two seqnames when I run liftOVer in R. What about '#Partially deleted in new'?

How can I recognize the '#Partially deleted in new' in R ?

liftOver • 1.0k views
ADD COMMENT

Login before adding your answer.

Traffic: 557 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6