Biostar LiftOver

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lifto liftOver

updated 3 days ago by Marcel Ramos 570 • written 18 days ago by james.dalgleish • 0

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569

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liftOver rtracklayer

updated 15 months ago by James W. MacDonald 60k • written 15 months ago by Mikhail Dozmorov ▴ 20

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479

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liftOver

updated 18 months ago by shepherl 3.1k • written 18 months ago by bluepebbles • 0

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275

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liftOver

18 months ago geneprophet • 0

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589

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hg19 liftover matrixeqtl DMRcate

updated 3.0 years ago by James W. MacDonald 60k • written 3.0 years ago by yoursbassanio ▴ 10

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677

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rtracklayer export.bw liftover

updated 3.5 years ago by Michael Lawrence 11k • written 3.5 years ago by ang ▴ 20

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625

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rtracklayer liftOver parameters minMatch

updated 4.1 years ago by Michael Lawrence 11k • written 4.1 years ago by Nik dAK ▴ 10

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1.8k

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rtracklayer liftover bioconductor R

updated 4.8 years ago by Michael Lawrence 11k • written 4.8 years ago by m.guelfi • 0

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1.2k

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liftover rtracklayer

updated 4.8 years ago by Michael Lawrence 11k • written 4.8 years ago by beausoleilmo • 0

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1.4k

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software error liftOver workflowinstall package installation

updated 5.6 years ago by James W. MacDonald 60k • written 5.6 years ago by JustGettinStarted • 0

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Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

Votes

Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Scholar to Nicole • 0

Teacher to Michael Love 37k