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liftOver
•
reset
0
votes
0
replies
478
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
13 months ago
bonheur
• 0
2
votes
2
replies
1.5k
views
broken chain import in liftOver
lifto
liftOver
updated 23 months ago by
Marcel Ramos
690 • written 23 months ago by
james.dalgleish
• 0
2
votes
3
replies
1.6k
views
liftOver bug, reproducible
liftOver
rtracklayer
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
Mikhail Dozmorov
▴ 30
0
votes
1
reply
1.3k
views
How to convert build 37 to build 38?
liftOver
updated 3.4 years ago by
shepherl
3.8k • written 3.4 years ago by
bluepebbles
• 0
0
votes
0
replies
819
views
liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
liftOver
3.5 years ago
geneprophet
• 0
1
vote
3
replies
1.2k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.2k
views
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer
export.bw
liftover
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
ang
▴ 20
0
votes
1
reply
1.1k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
Nik dAK
▴ 10
2
votes
3
replies
2.8k
views
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer
liftover
bioconductor
R
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
m.guelfi
• 0
0
votes
2
replies
1.7k
views
liftOver function in rtracklayer package is not working
liftover
rtracklayer
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
beausoleilmo
• 0
2
votes
10
replies
2.1k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
JustGettinStarted
• 0
11 results • Page
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Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Votes
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
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i.sudbery
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Michael Love
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