Bioconductor LiftOver

Showing : liftOver • reset

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659

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liftOver SNP GWASTools

18 months ago bonheur • 0

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1.8k

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lifto liftOver

updated 2.3 years ago by Marcel Ramos 700 • written 2.4 years ago by james.dalgleish • 0

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1.8k

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liftOver rtracklayer

updated 3.6 years ago by James W. MacDonald 67k • written 3.6 years ago by Mikhail Dozmorov ▴ 30

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1.6k

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liftOver

updated 3.8 years ago by shepherl 4.0k • written 3.8 years ago by bluepebbles • 0

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963

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liftOver

3.9 years ago geneprophet • 0

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1.4k

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hg19 liftover matrixeqtl DMRcate

updated 5.3 years ago by James W. MacDonald 67k • written 5.3 years ago by yoursbassanio ▴ 10

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1.4k

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rtracklayer export.bw liftover

updated 5.8 years ago by Michael Lawrence ★ 11k • written 5.8 years ago by ang ▴ 20

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1.3k

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rtracklayer liftOver parameters minMatch

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by Nik dAK ▴ 10

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3.1k

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rtracklayer liftover bioconductor R

updated 7.1 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by m.guelfi • 0

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1.8k

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liftover rtracklayer

updated 7.1 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by beausoleilmo • 0

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2.4k

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software error liftOver workflowinstall package installation

updated 7.9 years ago by James W. MacDonald 67k • written 8.0 years ago by JustGettinStarted • 0

11 results • Page 1 of 1

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Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

The odds ratio, not log FC. My bad.

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

``` testResult$Eff_Condition > 0.1 ```

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0

I identified 3804 genes with GO annotations. I put my liste of genes in this link [enter link description here][1] universe <- mapIds…

Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Hello, Thank you. I absolutely respect what you mention about p-values and logFC, I was just going to tackle that soon and thank you for po…

Comment: QSEA:Error in h(simpleError(msg, call)) by kf • 0

genome(qseaSet@regions)<-"BSgenome.Hsapiens.UCSC.hg38" solve the problem

Votes

Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: object 'hdac_targets' not found

Awards • All

Popular Question to rae.alshammari ▴ 10

Popular Question to Mthabisi Moyo ▴ 40