Is there currently something wrong with the rDGIdb API?
Entering edit mode
mike-zx • 0
Last seen 5 days ago

Today I tried to retrieve results for a query using the queryDGIdb function that yielded results just fine a few months back. The function is returning only empty data frames now. In fact not even the tutorial example will currently yield results:

> library(rDGIdb)
> genes <- c("TNF", "AP1", "AP2", "XYZA")
> result <- queryDGIdb(genes)
> resultSummary(result)

Object of class "data.frame"
data frame with 0 columns and 0 rows

> sessionInfo( )

R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19041)

Matrix products: default

[1] LC_COLLATE=Spanish_Mexico.1252  LC_CTYPE=Spanish_Mexico.1252   
[3] LC_MONETARY=Spanish_Mexico.1252 LC_NUMERIC=C                   
[5] LC_TIME=Spanish_Mexico.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rDGIdb_1.14.0

loaded via a namespace (and not attached):
[1] httr_1.4.2          BiocManager_1.30.10 compiler_4.0.3     
[4] R6_2.4.1            tools_4.0.3         curl_4.3           
[7] jsonlite_1.6.1

I tried all 3 archived versions of the package and running older R versions with no luck.

rDGIdb • 40 views

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