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Hello I am trying to install BSgenome.Hsapiens.UCSC.hg19 on Rstudio with R version 4.0.3 using the command below
BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")
I get an error and several warning messages
Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 48644749 != reported length 710245413
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘BSgenome.Hsapiens.UCSC.hg19’ failed
Old packages: 'nlme'
I wonder how I could solve this I would really appreciate your help
Thank you! so I found out my internet is really slow today so I downloaded the package separately and installed it manually in R. all fine
Thanks, @martin-morgan-1513. This helped download it.
Yes, this worked