Question

DESeq2

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amoaristotle ▴ 10

@user-24704

Last seen 4.7 years ago

please how can i filter my DEGs using | log2 fold change | >1.

Thanks

DESeq2 • 635 views

ADD COMMENT • link 4.7 years ago amoaristotle ▴ 10

score 0 · Answer 1 · 2021-02-05

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Kevin Blighe ★ 4.0k

@kevin

Last seen 6 weeks ago

The Cave, 181 Longwood Avenue, Boston, …

Hello,

This is a generic question about R coding and not related to DESeq2. Nevertheless, please try something like:

subset(results, abs(log2fc) > 1)

...or:

results[which(abs(results$log2fc) > 1),]

Kevin

ADD COMMENT • link 4.7 years ago Kevin Blighe ★ 4.0k

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thanks

ADD REPLY • link 4.7 years ago amoaristotle ▴ 10