Question

SingleR and SCTransform

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amel.zulji ▴ 20

@amelzulji-24297

Last seen 3.8 years ago

Hi folks,

How SingleR performs on SCTransformed data? Particularly, I want to transfer the cell annotations from SCTransformed data to SCTransformed data.

Thank you in advance for your help. Amel Zulji

SingleR • 2.6k views

ADD COMMENT • link updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by amel.zulji ▴ 20

score 0 · Answer 1 · 2021-02-10

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Aaron Lun ★ 28k

@alun

Last seen 5 hours ago

The city by the bay

Probably best to run it on the raw counts, see the discussion here.

ADD COMMENT • link 3.8 years ago Aaron Lun ★ 28k