User: endrebak85

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endrebak8530
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Posts by endrebak85

<prev • 29 results • page 1 of 3 • next >
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Comment: C: How do I do a bedtools like intersection in GenomicRanges?
... It is just pintersect, no? ...
written 12 months ago by endrebak8530
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Comment: C: How do I do a bedtools like intersection in GenomicRanges?
... Brilliant. Thanks! ...
written 12 months ago by endrebak8530
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Comment: C: nearest without overlapping
... Wouldn't the code be faster with precede(query, subject, select="first"), follow(query, subject, select="last") ? The only problem is that the code errors: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function 'from' for signature '"int ...
written 12 months ago by endrebak8530
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How do I do a bedtools like intersection in GenomicRanges?
... GenomicRanges intersect is more like what I would call set intersect - first the sets of A and B are computed, then intersection is done. Bedtools intersect finds the intersect of each interval in A with each interval in B which means that in the worst case, the number of output regions is the size ...
genomicranges written 12 months ago by endrebak8530 • updated 12 months ago by Michael Lawrence11k
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nearest without overlapping
... How I find distanceToNearest without overlapping ranges? I cannot see a flag for it in the docs. Any plans to add this? ...
genomicranges written 12 months ago by endrebak8530 • updated 12 months ago by Hervé Pagès ♦♦ 14k
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Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
... I want to deduct the coverage in one RleList from that of another. A - B. But the lengths of the coverages aren't going to be exactly the same, which means that the vectors will be rotated. This is not what I want. For example, if the Rle in chr1 in A is longer than that in B I want to extend chr1 ...
iranges s4vectors rle rlelist written 12 months ago by endrebak8530
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Comment: C: csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
... Brilliant, I'll wager this is it. Thanks. ...
written 22 months ago by endrebak8530
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csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
... csaw version: csaw_1.10.0 The call to combineTests below fails: > tabcom <- combineTests(merged$id, results$table) Error: length(ids) == nrow(tab) is not TRUE > length(merged$id) [1] 14051634 > nrow(results$table) [1] 120695 When I get this error, what might the possible causes be? ...
csaw written 22 months ago by endrebak8530 • updated 22 months ago by Aaron Lun24k
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Comment: C: Run windowCounts only on annotated regions?
... Thanks, csaw is wonderful. ...
written 2.4 years ago by endrebak8530
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Run windowCounts only on annotated regions?
... I want to run windowCounts only on some annotated regions. Is this possible? readParams has a discard-option, but not one for include... Thanks.  ...
csaw written 2.4 years ago by endrebak8530 • updated 2.4 years ago by Aaron Lun24k

Latest awards to endrebak85

Popular Question 17 months ago, created a question with more than 1,000 views. For How do I merge a list of GRanges?
Popular Question 2.4 years ago, created a question with more than 1,000 views. For How do I merge a list of GRanges?
Supporter 2.4 years ago, voted at least 25 times.
Scholar 2.4 years ago, created an answer that has been accepted. For A: edgeR::estimateDisp gives Error in qr.default(x) : NA/NaN/Inf in foreign functio

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