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19
votes
10
replies
18k
views
How do I merge a list of GRanges?
GenomicRanges
updated 2.2 years ago by ▴ 40 • written 7.8 years ago by ▴ 40
2
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0
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3.5k
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Answer: A: Finding the proper universe for enrichGO and enrichKEGG - only the genes that ar
4.7 years ago endrebak85 ▴ 40
2
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1
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3.5k
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Finding the proper universe for enrichGO and enrichKEGG - only the genes that are annotated in those ontologies
chipseeker ChIPseeker
4.7 years ago endrebak85 ▴ 40
0
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1
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1.8k
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Comment: C: How do I do a bedtools like intersection in GenomicRanges?
5.8 years ago endrebak85 ▴ 40
0
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1
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1.8k
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Comment: C: How do I do a bedtools like intersection in GenomicRanges?
5.8 years ago endrebak85 ▴ 40
5
votes
4
replies
1.8k
views
How do I do a bedtools like intersection in GenomicRanges?
genomicranges
updated 5.8 years ago by ★ 11k • written 5.8 years ago by ▴ 40
0
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0
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1.9k
views
Comment: C: nearest without overlapping
5.8 years ago endrebak85 ▴ 40
2
votes
12
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1.9k
views
nearest without overlapping
genomicranges
updated 5.8 years ago by 16k • written 5.8 years ago by ▴ 40
0
votes
0
replies
952
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
5.8 years ago endrebak85 ▴ 40
0
votes
0
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1.1k
views
Comment: C: csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
6.6 years ago endrebak85 ▴ 40
2
votes
2
replies
1.1k
views
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 40
0
votes
0
replies
920
views
Comment: C: Run windowCounts only on annotated regions?
7.2 years ago endrebak85 ▴ 40
2
votes
2
replies
920
views
Run windowCounts only on annotated regions?
csaw
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 40
0
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0
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4.7k
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Comment: C: edgeR::estimateDisp gives Error in qr.default(x) : NA/NaN/Inf in foreign functio
7.2 years ago endrebak85 ▴ 40
1
vote
3
replies
4.7k
views
edgeR::estimateDisp gives Error in qr.default(x) : NA/NaN/Inf in foreign function call (arg 1) (minimal working example included)
edgeR estimatedisp
7.2 years ago endrebak85 ▴ 40
0
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1
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4.7k
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Answer: A: edgeR::estimateDisp gives Error in qr.default(x) : NA/NaN/Inf in foreign functio
7.2 years ago endrebak85 ▴ 40
0
votes
0
replies
1.8k
views
Comment: C: csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
7.5 years ago endrebak85 ▴ 40
0
votes
2
replies
1.8k
views
Answer: A: csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
7.5 years ago endrebak85 ▴ 40
2
votes
11
replies
1.8k
views
csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
csaw
7.5 years ago endrebak85 ▴ 40
0
votes
0
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1.8k
views
Comment: C: csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
7.5 years ago endrebak85 ▴ 40
0
votes
1
reply
1.8k
views
Comment: C: csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
7.5 years ago endrebak85 ▴ 40
0
votes
2
replies
1.8k
views
Comment: C: csaw autosim.R: Error in crunch2BAM(fnames): failed to sort BAM file
7.5 years ago endrebak85 ▴ 40
0
votes
0
replies
5.2k
views
Comment: C: GenomicRanges: Take union of GRanges and keep metadata?
7.6 years ago endrebak85 ▴ 40
3
votes
4
replies
5.2k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange genomicranges
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 40
0
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0
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5.2k
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Answer: A: GenomicRanges: Take union of GRanges and keep metadata?
7.6 years ago endrebak85 ▴ 40
0
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0
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5.2k
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Comment: C: Take union of GRanges and keep metadata?
7.6 years ago endrebak85 ▴ 40
0
votes
1
reply
18k
views
Comment: C: How do I merge a list of GRanges?
7.8 years ago endrebak85 ▴ 40
0
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0
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18k
views
Comment: C: How do I merge a list of GRanges?
7.8 years ago endrebak85 ▴ 40
5
votes
4
replies
1.4k
views
Is there a way to remove or take the first overlapping gene(s) when using makeTxDbFromGFF?
genomicfeatures
updated 7.9 years ago by 16k • written 7.9 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Comment: C: Is there a way to remove or take the first overlapping gene(s) when using makeTx
7.9 years ago endrebak85 ▴ 40
2
votes
1
reply
991
views
How does csaw handle multiply aligned reads?
csaw chip-seq
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 40
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