User: jan.soderman

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Posts by jan.soderman

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failed ToPASeq / igraph installation: file present, but not found
... Hi, As root, I have tried to install the package 'ToPASeq' (or only the dependency 'igraph') with an error telling me that "libiconv.so.2: cannot open shared object file: No such file or directory" (see below). Using the Linux command: locate libiconv.so.2 I can see that the file exist under the f ...
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Comment: C: Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
... Many thanks for your help James. Using your supplied link to the the latest version of the assembled human genome, I have now successfully indexed the sequence using the buildindex() function of the Rsubread package. Clearly I did not know my way around the NCBI web-site, but have now discovered the ...
written 12 months ago by jan.soderman0
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Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
... Hi, I have tried to use the buildindex() function of the Rsubread package in conjuction with the human GRCh38.p7 reference sequence from NCBI, but get the following error: Check the integrity of provided reference sequences ...                    || ERROR: repeated chromosome name 'gi' is observed ...
rsubread ncbi grch38 hg38 written 12 months ago by jan.soderman0 • updated 12 months ago by Wei Shi2.7k

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