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similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.6 years ago jan.soderman • 0
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Comment: C: A contrast with four simultaneous conditions for DESeq2?
6.5 years ago jan.soderman • 0
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1.2k
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A contrast with four simultaneous conditions for DESeq2?
DESeq2 contrast results
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
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1.8k
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Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
6.5 years ago jan.soderman • 0
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1
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1.6k
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Remove highly similar terms from a GO gene set enrichment analysis
clusterProfiler gseGO gene ontology go semantic similarity gene set enrichment analysis
6.5 years ago jan.soderman • 0
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1.2k
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Error using gosummaries (GOsummaries) on small log2 fold change values
gosummaries gene ontology enrichment analysis
6.9 years ago jan.soderman • 0
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1.8k
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Comment: C: Reference for edge and node properties suitable for enrichMap{DOSE}
6.9 years ago jan.soderman • 0
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2
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1.8k
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Reference for edge and node properties suitable for enrichMap{DOSE}
DOSE ReactomePA enrichMap enrichPathway
updated 6.9 years ago by ★ 1.2k • written 6.9 years ago by • 0
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1.8k
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failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
7.9 years ago jan.soderman • 0
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4
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2.5k
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Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 8.1 years ago by ★ 3.6k • written 8.2 years ago by • 0
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Comment: C: Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
8.1 years ago jan.soderman • 0
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