User: harelarik

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Posts by harelarik

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Comment: C: limma- time course multiple treatments
... Help anyone??? ...
written 1 day ago by harelarik0
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Comment: C: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
... I apologize again for the very late response... ...
written 21 days ago by harelarik0
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Comment: A: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
... Sorry for the late response.. Thank you very much!!! ...
written 22 days ago by harelarik0
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Comment: C: limma- time course multiple treatments
... Help anyone?? ...
written 22 days ago by harelarik0
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Comment: C: limma- time course multiple treatments
... Help anyone? ...
written 25 days ago by harelarik0
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limma- time course multiple treatments
... Hi, We would like to test: control, treatment1, and treatment2 in a time course experiment using only few time points. However,  chapter 9.6.1 of limma guide that discusses time-course for few time points, illustrates how to test only two treatments (WT vs. a mutant). Questions: 1. I wonder if t ...
biomart written 27 days ago by harelarik0
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Answer: A: voomWithQualityWeights not functioning - function not found
... Thank you very much. I suspect Martin is right. It must be some command that overridden the voomWithQualityWeights()  I have terminated R session (ctrl+D). Than started a new one. Than: >library(limma) >library(edgeR) > voomWithQualityWeights() Error in is(counts, "DGEList") :   argu ...
written 3 months ago by harelarik0 • updated 3 months ago by Gordon Smyth32k
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Answer: A: voomWithQualityWeights not functioning - function not found
... What can I do?? ...
written 3 months ago by harelarik0
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Comment: A: voomWithQualityWeights not functioning - function not found
... #The following commands are working for the x DGEList object (x)  and for the design (des): v <- voom(x, des, plot=TRUE) vfit <- lmFit(v, design) vfit <- contrasts.fit(vfit, contrasts=contrast.matrix) efit <- eBayes(vfit) plotSA(efit)     ...
written 3 months ago by harelarik0

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