User: harelarik

gravatar for harelarik
harelarik • 0
Reputation:
0
Status:
New User
Location:
Last seen:
5 months ago
Joined:
1 year, 1 month ago
Email:
h********@gmail.com

Posts by harelarik

<prev • 28 results • page 1 of 3 • next >
0
votes
0
answers
155
views
0
answers
Comment: C: Study Modules significance (or Modules Preservation) in ONE network
... I was advised that it is possible to use modulePreservation with a single data set. Single set can be supplied both as reference, and as a test set. I the results, one should focus on module quality. ...
written 5 months ago by harelarik • 0
0
votes
0
answers
155
views
0
answers
Study Modules significance (or Modules Preservation) in ONE network
... Hi,   I am studying only one co-expression network utilizing WGCNA. I would like to validate that the modules identified by WGCNA are significantly above randomly generated modules.   1. What would be the best way to do it? 2. Is there a way to utilize the modulePreservation function to study ...
wgcna permutation modulepreservation modules significance written 5 months ago by harelarik • 0
0
votes
1
answers
1.6k
views
1
answers
Comment: C: WGCNA export to cytoscape
... Thank you very much! ...
written 8 months ago by harelarik • 0
0
votes
1
answers
1.6k
views
1
answers
Comment: C: WGCNA export to cytoscape
... Would be a good way to select the  "threshold", when using exportNetworkToCytoscape? ...
written 8 months ago by harelarik • 0
0
votes
1
answers
1.6k
views
1
answers
Comment: C: WGCNA export to cytoscape
... Thank you very much! ...
written 8 months ago by harelarik • 0
0
votes
1
answers
334
views
1
answers
Comment: C: How to select mergeCutHeight in WGCNA?
... Thank you! ...
written 8 months ago by harelarik • 0
0
votes
1
answers
1.6k
views
1
answers
Comment: C: WGCNA export to cytoscape
... 1. So the "weight" output of the edges file generated by exportNetworkToCytoscape is based on Topological Overlap Matrix (TOM), as oppesd to pearson correlation used to calculate distance from eigengene during modules generation which can be restricted by minKMEtoStay? Is it correct?   2. IS this ...
written 8 months ago by harelarik • 0
0
votes
1
answer
334
views
1
answer
How to select mergeCutHeight in WGCNA?
... Hi,   What is would be a good way to select mergeCutHeight for modules generation with  blockwiseModules?       Thank you,   Arik   ...
wgcna mergecutheight written 8 months ago by harelarik • 0 • updated 8 months ago by Peter Langfelder • 1.5k
0
votes
2
answers
423
views
2
answers
Comment: C: How to extract the voom normalized value for each observation?
... Dear Gordon, Thank you very much! ...
written 9 months ago by harelarik • 0
0
votes
2
answers
423
views
2
answers
Comment: C: How to extract the voom normalized value for each observation?
... Thank you!   Would you recommend using logCPM on raw counts on or TMM transformed values? ...
written 9 months ago by harelarik • 0

Latest awards to harelarik

No awards yet. Soon to come :-)
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 310 users visited in the last hour