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How well does "Trinity-Differential-Expression" work on normalized raw counts without RSEM abundance of estimation
Trinity DifferentialExpression RSEM RNAseq edgeR
3.4 years ago harelarik ▴ 60
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Comment: Comment: How well does "Trinity-Differential-Expression" work on normalized raw counts wi
3.4 years ago harelarik ▴ 60
0
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2
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1.5k
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Use of RSEM counts in WGCNA
rsemmed RSEM WGCNA
3.4 years ago harelarik ▴ 60
0
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1.5k
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Comment: Comment: Use of RSEM counts in WGCNA
3.4 years ago harelarik ▴ 60
0
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5.1k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.7 years ago harelarik ▴ 60
0
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0
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5.1k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.7 years ago harelarik ▴ 60
0
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1
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5.1k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.7 years ago harelarik ▴ 60
0
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0
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1.8k
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Comment: C: Importing RSEM with tximport
3.7 years ago harelarik ▴ 60
0
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1
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5.1k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.7 years ago harelarik ▴ 60
0
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1
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1.8k
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Comment: C: Importing RSEM with tximport
3.7 years ago harelarik ▴ 60
6
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13
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5.1k
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How to use RSEM value to find differentially expressed genes
RSEM limma edgeR voom normalization
updated 21 months ago by 50k • written 3.7 years ago by ▴ 60
0
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1
reply
1.8k
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Comment: C: Importing RSEM with tximport
3.7 years ago harelarik ▴ 60
0
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1
reply
1.8k
views
Comment: C: Importing RSEM with tximport
3.7 years ago harelarik ▴ 60
0
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8
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1.8k
views
Importing RSEM with tximport
tximport RSEM import error
updated 3.7 years ago by 41k • written 3.7 years ago by ▴ 60
0
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1
reply
5.1k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.7 years ago harelarik ▴ 60
0
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0
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3.6k
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Comment: C: Which R version is needed for tximport package?
3.7 years ago harelarik ▴ 60
0
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1
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5.1k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.7 years ago harelarik ▴ 60
0
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1
reply
3.6k
views
Comment: C: Which R version is needed for tximport package?
3.7 years ago harelarik ▴ 60
0
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1
reply
3.6k
views
Comment: C: Which R version is needed for tximport package?
3.7 years ago harelarik ▴ 60
2
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8
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3.6k
views
Which R version is needed for tximport package?
tximport package R version install tximport
3.7 years ago harelarik ▴ 60
0
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0
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3.6k
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Answer: A: Which R version is needed for tximport package?
3.7 years ago harelarik ▴ 60
0
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1
reply
3.6k
views
Comment: C: Which R version is needed for tximport package?
3.7 years ago harelarik ▴ 60
2
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1
reply
1.2k
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
4.1 years ago harelarik ▴ 60
0
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0
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1.2k
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Answer: A: Multiple protein ids issue- which protein IDs should be selected for downstream
4.1 years ago harelarik ▴ 60
0
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2
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1.1k
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Study Modules significance (or Modules Preservation) in ONE network
modulePreservation WGCNA modules significance permutation
6.0 years ago • updated 4.1 years ago harelarik ▴ 60
0
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0
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1.1k
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Answer: A: Study Modules significance (or Modules Preservation) in ONE network
4.1 years ago harelarik ▴ 60
0
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0
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8.3k
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Comment: C: WGCNA export to cytoscape
6.3 years ago harelarik ▴ 60
0
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1
reply
8.3k
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Comment: C: WGCNA export to cytoscape
6.3 years ago harelarik ▴ 60
0
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0
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8.3k
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Comment: C: WGCNA export to cytoscape
6.3 years ago harelarik ▴ 60
0
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0
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4.3k
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Comment: C: How to select mergeCutHeight in WGCNA?
6.3 years ago harelarik ▴ 60
1
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1
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8.3k
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Comment: C: WGCNA export to cytoscape
6.3 years ago harelarik ▴ 60
2
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2
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4.3k
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How to select mergeCutHeight in WGCNA?
WGCNA mergeCutHeight
updated 6.3 years ago by ★ 3.0k • written 6.3 years ago by ▴ 60
0
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0
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4.2k
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Comment: C: How to extract the voom normalized value for each observation?
6.4 years ago harelarik ▴ 60
0
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0
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4.2k
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Comment: C: How to extract the voom normalized value for each observation?
6.4 years ago harelarik ▴ 60
0
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0
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4.2k
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Comment: C: How to extract the voom normalized value for each observation?
6.4 years ago harelarik ▴ 60
0
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1
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4.2k
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Comment: C: How to extract the voom normalized value for each observation?
6.4 years ago harelarik ▴ 60
2
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8
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4.2k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights output
updated 6.4 years ago by 50k • written 6.4 years ago by ▴ 60
0
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0
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1.8k
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Comment: C: limma- time course multiple treatments
6.4 years ago harelarik ▴ 60
0
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0
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1.8k
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Comment: C: limma- time course multiple treatments
6.4 years ago harelarik ▴ 60
0
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1
reply
1.8k
views
Comment: C: limma- time course multiple treatments
6.4 years ago harelarik ▴ 60
0
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0
replies
952
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Comment: C: Limma time-course: how to apply differential contrast if time zero is considered
6.4 years ago harelarik ▴ 60
0
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1
reply
1.8k
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Comment: C: limma- time course multiple treatments
6.4 years ago harelarik ▴ 60
0
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9
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1.8k
views
limma- time course multiple treatments
limma time course
6.5 years ago • updated 6.4 years ago harelarik ▴ 60
0
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2
replies
952
views
Limma time-course: how to apply differential contrast if time zero is considered both as treatment and control?
Limma time-course
6.4 years ago harelarik ▴ 60
0
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0
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2.2k
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Comment: C: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
6.5 years ago harelarik ▴ 60
0
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0
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2.2k
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Comment: C: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
6.5 years ago harelarik ▴ 60
0
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1
reply
2.2k
views
Comment: A: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
6.5 years ago harelarik ▴ 60
2
votes
6
replies
2.2k
views
Does LIMMA accept as an input "variance Stabilizing Transformation" generated by DSEQ
LIMMA VST
6.8 years ago • updated 6.5 years ago harelarik ▴ 60
0
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1
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1.9k
views
Answer: A: voomWithQualityWeights not functioning - function not found
updated 6.7 years ago by 50k • written 6.7 years ago by ▴ 60
1
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7
replies
1.9k
views
voomWithQualityWeights not functioning - function not found
limma
6.7 years ago harelarik ▴ 60
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