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Answer: Answer: Why p value inconsistent when using different number of pathway score?
3 days ago ATpoint ★ 4.0k
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182
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
4 days ago ATpoint ★ 4.0k
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182
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
5 days ago ATpoint ★ 4.0k
0
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77
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Comment: Comment: Input Question for deseq.r
5 days ago ATpoint ★ 4.0k
0
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109
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
5 days ago ATpoint ★ 4.0k
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108
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Comment: Comment: Deseq2 Rlog transformation
8 days ago ATpoint ★ 4.0k
0
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218
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
9 days ago • updated 8 days ago ATpoint ★ 4.0k
1
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391
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Comment: Comment: Not fully paired differential gene expression analysis
10 days ago ATpoint ★ 4.0k
1
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143
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Comment: Comment: [DiffBind] Obtaining normalization factors
10 days ago ATpoint ★ 4.0k
1
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225
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
12 days ago ATpoint ★ 4.0k
1
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225
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
12 days ago ATpoint ★ 4.0k
1
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225
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
12 days ago ATpoint ★ 4.0k
0
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117
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Answer: Answer: Can you find the correct transcript in scRNA seq data
13 days ago ATpoint ★ 4.0k
1
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391
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Comment: Comment: Not fully paired differential gene expression analysis
13 days ago ATpoint ★ 4.0k
0
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167
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
18 days ago ATpoint ★ 4.0k
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320
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Comment: Comment: PCA of different bacterial species
27 days ago ATpoint ★ 4.0k
2
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216
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
29 days ago ATpoint ★ 4.0k
0
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1
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263
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
4 weeks ago ATpoint ★ 4.0k
0
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263
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
4 weeks ago ATpoint ★ 4.0k
1
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0
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255
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
4 weeks ago ATpoint ★ 4.0k
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239
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Comment: Comment: Help with Complex DESeq2 Design
4 weeks ago ATpoint ★ 4.0k
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185
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Comment: Comment: Visium RNA
5 weeks ago ATpoint ★ 4.0k
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2.2k
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Comment: Comment: Fail BiocManager::install(version='3.12')
5 weeks ago ATpoint ★ 4.0k
0
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0
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298
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
5 weeks ago ATpoint ★ 4.0k
0
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224
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
5 weeks ago ATpoint ★ 4.0k
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1
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233
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Answer: Answer: RNA sequencing raw counts gene filtering
5 weeks ago ATpoint ★ 4.0k
0
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0
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205
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Answer: Answer: i'm not getting any differentially expressed genes.
6 weeks ago ATpoint ★ 4.0k
2
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232
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
6 weeks ago ATpoint ★ 4.0k
1
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0
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195
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Answer: Answer: Perform PCA for sample clustering using DESeq2
6 weeks ago ATpoint ★ 4.0k
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0
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194
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Comment: Comment: Rcpp compilation error
6 weeks ago ATpoint ★ 4.0k
0
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204
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
6 weeks ago ATpoint ★ 4.0k
0
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373
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Comment: Comment: DESeq and SVA for batch effect
6 weeks ago ATpoint ★ 4.0k
0
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0
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203
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Answer: Answer: Unusually large fold-changes in Deseq2 results
6 weeks ago ATpoint ★ 4.0k
0
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1
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323
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Comment: Comment: Factor vs Character in design
6 weeks ago ATpoint ★ 4.0k
0
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0
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348
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
7 weeks ago ATpoint ★ 4.0k
1
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1
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320
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
7 weeks ago ATpoint ★ 4.0k
0
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320
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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
7 weeks ago ATpoint ★ 4.0k
0
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0
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238
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Comment: Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
8 weeks ago ATpoint ★ 4.0k
0
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1
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298
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Comment: Comment: problem in installing the new version of bioconductor
8 weeks ago ATpoint ★ 4.0k
1
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0
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334
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
8 weeks ago ATpoint ★ 4.0k
0
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0
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337
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Comment: Comment: vst transformation and zero counts
8 weeks ago ATpoint ★ 4.0k
1
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1
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499
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Comment: Comment: Average biological replicates in RNA-seq
8 weeks ago ATpoint ★ 4.0k
0
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1
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499
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Comment: Comment: Average biological replicates in RNA-seq
9 weeks ago ATpoint ★ 4.0k
2
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1
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499
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Answer: Answer: Average biological replicates in RNA-seq
9 weeks ago ATpoint ★ 4.0k
0
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0
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218
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
9 weeks ago ATpoint ★ 4.0k
0
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0
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167
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Answer: Answer: Inconsistency in DESeq2 Log fold change
9 weeks ago ATpoint ★ 4.0k
0
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0
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238
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
9 weeks ago ATpoint ★ 4.0k
1
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1
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568
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Comment: Comment: How do you post on this forum?
10 weeks ago ATpoint ★ 4.0k
0
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0
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241
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
10 weeks ago ATpoint ★ 4.0k
2
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1
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374
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
10 weeks ago ATpoint ★ 4.0k
885 results • Page 1 of 18
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