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Comment: Comment: Recount3: PCR duplicates
1 day ago ATpoint ★ 4.2k
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273
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Comment: Comment: Error when trying to do different pairwise comparisons and lfcshrink than what's
3 days ago ATpoint ★ 4.2k
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1
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273
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Answer: Answer: Error when trying to do different pairwise comparisons and lfcshrink than what's
3 days ago ATpoint ★ 4.2k
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117
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Answer: Answer: How to rank DEG for GSEA using DEseq2 result ?
8 days ago ATpoint ★ 4.2k
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125
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Answer: Answer: Run DEXSeq successfully but got a result that padj==1 in all genes
8 days ago ATpoint ★ 4.2k
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178
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Comment: Comment: output from RAIN doesn't look rhythmic
11 days ago ATpoint ★ 4.2k
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149
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Answer: Answer: unreal negative log2fc values
21 days ago ATpoint ★ 4.2k
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1
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266
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Comment: Comment: How to search Pubmed Central or other fulltext literature base using regex?
25 days ago ATpoint ★ 4.2k
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2
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434
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
4 weeks ago ATpoint ★ 4.2k
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520
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Comment: Comment: Too many significant genes when integrating gtex and tcga
4 weeks ago ATpoint ★ 4.2k
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188
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Answer: Answer: DESeq2 - vst() - log2FC - no replicates
5 weeks ago ATpoint ★ 4.2k
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313
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Answer: Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
5 weeks ago ATpoint ★ 4.2k
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659
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Comment: Comment: Create multiple DoparParams with different number of registered cores
5 weeks ago ATpoint ★ 4.2k
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6
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659
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Create multiple DoparParams with different number of registered cores
BiocParallel
updated 5 weeks ago by 66k • written 5 weeks ago by ★ 4.2k
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659
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Comment: Comment: Create multiple DoparParams with different number of registered cores
5 weeks ago ATpoint ★ 4.2k
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1
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339
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
6 weeks ago ATpoint ★ 4.2k
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339
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
6 weeks ago ATpoint ★ 4.2k
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1.9k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
6 weeks ago ATpoint ★ 4.2k
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361
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Comment: Comment: When I tried to use the functions from the celldex package to fetch information,
6 weeks ago ATpoint ★ 4.2k
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401
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Comment: Comment: Issues with installing Bioconductor packages (eg GEOquery)
7 weeks ago ATpoint ★ 4.2k
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401
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Answer: Answer: Issues with installing Bioconductor packages (eg GEOquery)
7 weeks ago ATpoint ★ 4.2k
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185
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Answer: Answer: How to access the Bioconductor in Windows
7 weeks ago ATpoint ★ 4.2k
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326
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Comment: Comment: Ploting of normalized counts after batch removal
7 weeks ago ATpoint ★ 4.2k
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271
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Answer: Answer: Deseq2
8 weeks ago ATpoint ★ 4.2k
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1.2k
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Comment: Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
8 weeks ago ATpoint ★ 4.2k
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1
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459
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Comment: Comment: Counter-directional LFC shrinkage
8 weeks ago ATpoint ★ 4.2k
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554
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
8 weeks ago ATpoint ★ 4.2k
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1
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300
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Answer: Answer: Normalisation using clinical traits in RNA seq using DESeq2
9 weeks ago • updated 8 weeks ago ATpoint ★ 4.2k
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1
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554
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Answer: Answer: Volcano plot of scRNA-seq data not "centered"
9 weeks ago ATpoint ★ 4.2k
0
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1
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788
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
9 weeks ago ATpoint ★ 4.2k
0
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1
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788
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
9 weeks ago ATpoint ★ 4.2k
2
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1
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262
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Answer: Answer: Get gene symbols for a set of hg19 coordinates
9 weeks ago ATpoint ★ 4.2k
1
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1
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1.1k
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Comment: Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
9 weeks ago ATpoint ★ 4.2k
1
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0
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262
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Comment: Comment: unable to access bioconductor packages - qvalue installation failed...
9 weeks ago ATpoint ★ 4.2k
0
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1
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423
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Comment: Comment: Slightly different count plots from R and spreadsheet
9 weeks ago ATpoint ★ 4.2k
0
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2
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426
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Comment: Comment: all variables in design formula must be columns in colData (Deseq2) error
9 weeks ago ATpoint ★ 4.2k
0
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1
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426
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Answer: Answer: all variables in design formula must be columns in colData (Deseq2) error
9 weeks ago ATpoint ★ 4.2k
1
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0
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521
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
10 weeks ago ATpoint ★ 4.2k
0
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1
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521
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
10 weeks ago ATpoint ★ 4.2k
1
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1
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521
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
10 weeks ago ATpoint ★ 4.2k
0
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1
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416
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Comment: Comment: Problem installing ChAMP on a MacBook
10 weeks ago ATpoint ★ 4.2k
1
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0
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374
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Comment: Comment: How to correctly adjust for gender in edgeR
10 weeks ago ATpoint ★ 4.2k
1
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1
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521
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
10 weeks ago ATpoint ★ 4.2k
0
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0
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265
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Answer: Answer: Differential gene expression analysis results
11 weeks ago ATpoint ★ 4.2k
0
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0
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213
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Answer: Answer: normalization using Deseq2
11 weeks ago ATpoint ★ 4.2k
0
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1
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685
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Comment: Comment: deseq2 results
11 weeks ago ATpoint ★ 4.2k
0
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1
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735
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Comment: Comment: Extremely small p-values using Limma for proteomic data
11 weeks ago ATpoint ★ 4.2k
0
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0
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519
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Comment: Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
11 weeks ago ATpoint ★ 4.2k
0
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1
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735
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Comment: Comment: Extremely small p-values using Limma for proteomic data
11 weeks ago ATpoint ★ 4.2k
0
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0
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327
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Comment: Comment: Couldn't connect to server while using "pathways"
11 weeks ago ATpoint ★ 4.2k
951 results • Page 1 of 20
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