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169
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Answer: Answer: Best tximport quant.genes.sf
1 day ago ATpoint ★ 4.8k
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Comment: Comment: How to load scRNA-seq data from GEO
5 days ago ATpoint ★ 4.8k
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2
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2.5k
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Comment: Comment: How to load scRNA-seq data from GEO
6 days ago ATpoint ★ 4.8k
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2
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2.5k
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Comment: Comment: How to load scRNA-seq data from GEO
6 days ago ATpoint ★ 4.8k
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128
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Comment: Comment: FlowSOM is unable to create Output
7 days ago ATpoint ★ 4.8k
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606
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Comment: Comment: Discrepancies in normalised count data vs unnormalised
13 days ago ATpoint ★ 4.8k
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470
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Answer: Answer: Design formula for circadian time-course data for vst() function
14 days ago ATpoint ★ 4.8k
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16k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
16 days ago ATpoint ★ 4.8k
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513
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Comment: Comment: Check removeBatchEffect effectiveness
16 days ago ATpoint ★ 4.8k
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1.8k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
22 days ago ATpoint ★ 4.8k
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758
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Answer: Answer: Log2foldchange strange behavior
29 days ago ATpoint ★ 4.8k
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758
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Comment: Comment: Log2foldchange strange behavior
29 days ago ATpoint ★ 4.8k
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605
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Answer: Answer: WGCNA
4 weeks ago ATpoint ★ 4.8k
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Comment: Comment: Differential expression analysis using two TCGA datasets
4 weeks ago ATpoint ★ 4.8k
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1.2k
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Answer: Answer: PhD scholar
4 weeks ago ATpoint ★ 4.8k
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2.3k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
4 weeks ago ATpoint ★ 4.8k
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1.4k
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Answer: Answer: Origin of the labels for the SingleCellMultiModal dataset
5 weeks ago ATpoint ★ 4.8k
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2
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2.3k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
5 weeks ago ATpoint ★ 4.8k
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2.0k
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Comment: Comment: DiffBind can't find a DAR
5 weeks ago ATpoint ★ 4.8k
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1
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2.6k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
5 weeks ago ATpoint ★ 4.8k
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813
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Comment: Comment: DESeq - help with pair wise comparisons
5 weeks ago ATpoint ★ 4.8k
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2.6k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
5 weeks ago ATpoint ★ 4.8k
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1
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2.6k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
5 weeks ago ATpoint ★ 4.8k
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1
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2.6k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
5 weeks ago ATpoint ★ 4.8k
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579
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Answer: Answer: DESeq2
6 weeks ago ATpoint ★ 4.8k
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798
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Comment: Comment: ComBat with repeated measures
6 weeks ago ATpoint ★ 4.8k
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1.3k
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Comment: Comment: Surprising behavior for DEXseq dispersion estimate plot?
6 weeks ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
6 weeks ago ATpoint ★ 4.8k
2
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1
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723
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Answer: Answer: Explannation for ROAST results
7 weeks ago ATpoint ★ 4.8k
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0
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1.4k
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Comment: Comment: Using TPM from tximport of Salmon output for singscore
7 weeks ago ATpoint ★ 4.8k
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0
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723
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Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
8 weeks ago ATpoint ★ 4.8k
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1
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479
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Comment: Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
8 weeks ago ATpoint ★ 4.8k
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444
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Answer: Answer: affy::rma results doesn't match with ncbi website
8 weeks ago ATpoint ★ 4.8k
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2
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2.3k
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Answer: Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
8 weeks ago ATpoint ★ 4.8k
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1
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494
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Comment: Comment: Removing UTR from GTF for gene quantification
9 weeks ago ATpoint ★ 4.8k
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591
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Comment: Comment: Using tximport for kallisto aligned recount2 data
9 weeks ago ATpoint ★ 4.8k
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693
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Comment: Comment: how many significant figures are there in DESeq2 output
10 weeks ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
10 weeks ago ATpoint ★ 4.8k
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693
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Answer: Answer: how many significant figures are there in DESeq2 output
10 weeks ago ATpoint ★ 4.8k
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1.1k
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Answer: Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
10 weeks ago ATpoint ★ 4.8k
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1
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1.2k
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Answer: Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
10 weeks ago ATpoint ★ 4.8k
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1
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1.1k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
10 weeks ago ATpoint ★ 4.8k
1
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0
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331
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Answer: Answer: DEseq2 design for additive treatment
11 weeks ago ATpoint ★ 4.8k
2
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1
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647
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Answer: Answer: Plot title for PCA in DESeq2
11 weeks ago ATpoint ★ 4.8k
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0
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806
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Answer: Answer: Automatically install dependencies
12 weeks ago ATpoint ★ 4.8k
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1.1k
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Comment: Comment: Weird p-values using DESeq2?
12 weeks ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: Overcoming confounding in batch effect correction
12 weeks ago ATpoint ★ 4.8k
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2
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1.2k
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Comment: Comment: Overcoming confounding in batch effect correction
12 weeks ago ATpoint ★ 4.8k
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0
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540
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Answer: Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi
3 months ago ATpoint ★ 4.8k
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0
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239
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Answer: Answer: Error: lexical error: invalid char in json text (alevin-seurat)
3 months ago ATpoint ★ 4.8k
1,065 results • Page 1 of 22
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