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116
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Answer:
Answer: wgcna module preseravtion taking too long?
7 days ago
ATpoint
★ 5.0k
0
votes
0
replies
170
views
Answer:
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
8 days ago
ATpoint
★ 5.0k
0
votes
0
replies
172
views
Answer:
Answer: Question about DESeq2 Design for Paired Treatment Study
4 weeks ago
ATpoint
★ 5.0k
1
vote
1
reply
939
views
Comment:
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
5 weeks ago
ATpoint
★ 5.0k
1
vote
0
replies
939
views
Comment:
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
5 weeks ago
ATpoint
★ 5.0k
0
votes
0
replies
234
views
Answer:
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
6 weeks ago
ATpoint
★ 5.0k
0
votes
0
replies
268
views
Comment:
Comment: Using DESeq2 for age prediction
9 weeks ago
ATpoint
★ 5.0k
0
votes
1
reply
268
views
Answer:
Answer: Using DESeq2 for age prediction
9 weeks ago
ATpoint
★ 5.0k
1
vote
0
replies
459
views
Comment:
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
12 weeks ago
ATpoint
★ 5.0k
0
votes
1
reply
451
views
Answer:
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
12 weeks ago
ATpoint
★ 5.0k
1
vote
1
reply
366
views
Answer:
Answer: Error Loading Experiment from SimBenchData Package
3 months ago
ATpoint
★ 5.0k
0
votes
0
replies
322
views
Comment:
Comment: replace cat with message in glmTreat when lfc = 0
3 months ago
ATpoint
★ 5.0k
0
votes
0
replies
440
views
Answer:
Answer: readDNAStringSet with non DNA characters
3 months ago
ATpoint
★ 5.0k
1
vote
0
replies
1.8k
views
Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago
ATpoint
★ 5.0k
0
votes
1
reply
13k
views
Comment:
Comment: Can NanoString data be analyzed using DESeq2?
4 months ago
ATpoint
★ 5.0k
0
votes
2
replies
1.8k
views
Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.8k
views
Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago
ATpoint
★ 5.0k
0
votes
1
reply
770
views
Comment:
Comment: Are voomByGroup and voomLmFit compatible?
4 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.8k
views
Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago
ATpoint
★ 5.0k
0
votes
0
replies
436
views
Comment:
Comment: Differential expression on the transcript-level
5 months ago
ATpoint
★ 5.0k
1
vote
2
replies
5.7k
views
Comment:
Comment: competitive enrichment test yields too few significant results, self-contained t
5 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.0k
views
Comment:
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
5 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.0k
views
Comment:
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
5 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.0k
views
Comment:
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
5 months ago
ATpoint
★ 5.0k
1
vote
1
reply
5.7k
views
Comment:
Comment: competitive enrichment test yields too few significant results, self-contained t
5 months ago
ATpoint
★ 5.0k
0
votes
0
replies
2.4k
views
Answer:
Answer: Regarding the issue of background genes in enrichment analysis
5 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.0k
views
Answer:
Answer: gene detection across experiments
6 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.1k
views
Answer:
Answer: Starting with a clean bioconductor rstudio container
6 months ago
ATpoint
★ 5.0k
0
votes
0
replies
584
views
Answer:
Answer: Problem in Chip-seq data analysis using MACS3
6 months ago
ATpoint
★ 5.0k
1
vote
0
replies
2.7k
views
Answer:
Answer: Deseq2 paired sample in the design is considered as "batch"?
6 months ago
ATpoint
★ 5.0k
1
vote
0
replies
1.5k
views
Answer:
Answer: Biological replicates consideration in DESeq2 design formula.
6 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.3k
views
Answer:
Answer: Heatmap of the Count Matrix
6 months ago
ATpoint
★ 5.0k
0
votes
0
replies
626
views
Answer:
Answer: DESeq2 results
6 months ago
ATpoint
★ 5.0k
0
votes
0
replies
5.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
6 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.6k
views
Comment:
Comment: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.6k
views
Comment:
Comment: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
7 months ago
ATpoint
★ 5.0k
0
votes
0
replies
487
views
Answer:
Answer: Best tximport quant.genes.sf
7 months ago
ATpoint
★ 5.0k
0
votes
2
replies
5.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
7 months ago
ATpoint
★ 5.0k
0
votes
2
replies
5.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
7 months ago
ATpoint
★ 5.0k
0
votes
2
replies
5.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
7 months ago
ATpoint
★ 5.0k
0
votes
1
reply
728
views
Comment:
Comment: FlowSOM is unable to create Output
7 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.8k
views
Comment:
Comment: Discrepancies in normalised count data vs unnormalised
8 months ago
ATpoint
★ 5.0k
0
votes
1
reply
754
views
Answer:
Answer: Design formula for circadian time-course data for vst() function
8 months ago
ATpoint
★ 5.0k
0
votes
0
replies
17k
views
Comment:
Comment: GSEA preranked analysis downstream of DEseq2
8 months ago
ATpoint
★ 5.0k
1
vote
0
replies
3.4k
views
Comment:
Comment: Check removeBatchEffect effectiveness
8 months ago
ATpoint
★ 5.0k
1
vote
2
replies
2.9k
views
Answer:
Answer: edgeR::cpm() results in negative values from raw counts of 0
8 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.1k
views
Answer:
Answer: Log2foldchange strange behavior
8 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.1k
views
Comment:
Comment: Log2foldchange strange behavior
8 months ago
ATpoint
★ 5.0k
0
votes
0
replies
936
views
Answer:
Answer: WGCNA
8 months ago
ATpoint
★ 5.0k
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