Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
239
views
Comment: Comment: ComBat with repeated measures
1 day ago ATpoint ★ 4.8k
0
votes
0
replies
1.1k
views
Comment: Comment: Surprising behavior for DEXseq dispersion estimate plot?
1 day ago ATpoint ★ 4.8k
0
votes
0
replies
606
views
Comment: Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
3 days ago • updated 2 days ago ATpoint ★ 4.8k
2
votes
1
reply
572
views
Answer: Answer: Explannation for ROAST results
3 days ago ATpoint ★ 4.8k
1
vote
0
replies
1.3k
views
Comment: Comment: Using TPM from tximport of Salmon output for singscore
10 days ago ATpoint ★ 4.8k
0
votes
0
replies
438
views
Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
10 days ago ATpoint ★ 4.8k
0
votes
1
reply
249
views
Comment: Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
11 days ago ATpoint ★ 4.8k
0
votes
0
replies
383
views
Answer: Answer: affy::rma results doesn't match with ncbi website
12 days ago ATpoint ★ 4.8k
1
vote
1
reply
1.2k
views
Answer: Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
16 days ago ATpoint ★ 4.8k
0
votes
1
reply
414
views
Comment: Comment: Removing UTR from GTF for gene quantification
19 days ago ATpoint ★ 4.8k
0
votes
1
reply
510
views
Comment: Comment: Using tximport for kallisto aligned recount2 data
22 days ago ATpoint ★ 4.8k
0
votes
0
replies
614
views
Comment: Comment: how many significant figures are there in DESeq2 output
27 days ago ATpoint ★ 4.8k
0
votes
0
replies
1.1k
views
Comment: Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
28 days ago ATpoint ★ 4.8k
0
votes
1
reply
614
views
Answer: Answer: how many significant figures are there in DESeq2 output
28 days ago ATpoint ★ 4.8k
1
vote
0
replies
725
views
Answer: Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
28 days ago ATpoint ★ 4.8k
0
votes
1
reply
1.1k
views
Answer: Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
29 days ago ATpoint ★ 4.8k
0
votes
1
reply
996
views
Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
4 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
298
views
Answer: Answer: DEseq2 design for additive treatment
4 weeks ago ATpoint ★ 4.8k
2
votes
1
reply
547
views
Answer: Answer: Plot title for PCA in DESeq2
4 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
606
views
Answer: Answer: Automatically install dependencies
5 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
1.1k
views
Comment: Comment: Weird p-values using DESeq2?
6 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
1.1k
views
Comment: Comment: Overcoming confounding in batch effect correction
6 weeks ago ATpoint ★ 4.8k
1
vote
2
replies
1.1k
views
Comment: Comment: Overcoming confounding in batch effect correction
6 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
384
views
Answer: Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi
6 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
186
views
Answer: Answer: Error: lexical error: invalid char in json text (alevin-seurat)
6 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
387
views
Answer: Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
7 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
985
views
Comment: Comment: Why select top highly expressed genes based on normalized counts, but then plot
8 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
985
views
Answer: Answer: Why select top highly expressed genes based on normalized counts, but then plot
8 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
424
views
Comment: Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
8 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
222
views
Answer: Answer: WGCNA sample-data preprocessing order
9 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
230
views
Answer: Answer: WGCNA: Can we use high power (26) for signed network?
9 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
145
views
Answer: Answer: Ph.D. scholar
9 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
572
views
Comment: Comment: EdgeR Biological CVs
9 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
543
views
Answer: Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
9 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
918
views
Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
11 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
234
views
Comment: Comment: Installation error for Rsamtools.
11 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
918
views
Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
11 weeks ago ATpoint ★ 4.8k
1
vote
2
replies
918
views
Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
11 weeks ago ATpoint ★ 4.8k
0
votes
2
replies
576
views
Answer: Answer: DESeq2 analysis with transcript counts
11 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
1.1k
views
Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
11 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
414
views
Answer: Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
12 weeks ago ATpoint ★ 4.8k
2
votes
0
replies
553
views
Answer: Answer: Standardization of rlog transformed counts before PCA
3 months ago ATpoint ★ 4.8k
0
votes
0
replies
1.0k
views
Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
3 months ago ATpoint ★ 4.8k
0
votes
0
replies
1.0k
views
Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
3 months ago ATpoint ★ 4.8k
0
votes
1
reply
1.0k
views
Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
3 months ago ATpoint ★ 4.8k
1
vote
0
replies
2.8k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
3 months ago ATpoint ★ 4.8k
2
votes
1
reply
936
views
Answer: Answer: RSubread output significantly different from bash Subread output
3 months ago ATpoint ★ 4.8k
1
vote
1
reply
2.8k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
4 months ago ATpoint ★ 4.8k
1
vote
1
reply
2.8k
views
Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
4 months ago ATpoint ★ 4.8k
0
votes
0
replies
319
views
Comment: Comment: WGCNA with TPM tables
4 months ago ATpoint ★ 4.8k
1,042 results • Page 1 of 21
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6