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Comment: C: Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
3.7 years ago lirongrossmann ▴ 80
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2.6k
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Comment: C: Cluster location in UMAP using SingleCellExperiment and SingleR
3.7 years ago lirongrossmann ▴ 80
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1.3k
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Comment: C: Raw counts for reference dataset in single cell rnaseq
3.7 years ago lirongrossmann ▴ 80
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1.3k
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Comment: C: marker genes in single cell experiment
3.7 years ago lirongrossmann ▴ 80
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1.5k
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Comment: C: most correlated genes in SingleR
3.7 years ago lirongrossmann ▴ 80
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2.1k
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Comment: C: Trajectory analysis for single cell sequencing
3.7 years ago lirongrossmann ▴ 80
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2.1k
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Comment: C: Trajectory analysis for single cell sequencing
3.7 years ago lirongrossmann ▴ 80
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3.2k
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Comment: C: Batch effect removal with Deseq2
6.4 years ago lirongrossmann ▴ 80
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1.5k
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Comment: C: calculating logfold change from variance stabilizing transformation
6.5 years ago lirongrossmann ▴ 80
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1.5k
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Comment: C: calculating logfold change from variance stabilizing transformation
6.5 years ago lirongrossmann ▴ 80
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2.4k
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Comment: C: comparing strand-specific counts to unstranded counts
6.5 years ago lirongrossmann ▴ 80
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1
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2.4k
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Comment: C: comparing strand-specific counts to unstranded counts
6.5 years ago lirongrossmann ▴ 80
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1
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2.4k
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Comment: C: comparing strand-specific counts to unstranded counts
6.5 years ago lirongrossmann ▴ 80
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1
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2.4k
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Comment: A: comparing strand-specific counts to unstranded counts
6.5 years ago lirongrossmann ▴ 80
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1
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2.4k
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Comment: C: Quantile normalization and Deseq2
6.5 years ago lirongrossmann ▴ 80
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1.7k
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Comment: C: expression matrix with varianceStabilizingTransformation
updated 6.5 years ago by 41k • written 6.5 years ago by ▴ 80
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1.7k
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Comment: C: expression matrix with varianceStabilizingTransformation
6.6 years ago lirongrossmann ▴ 80
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1.3k
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Comment: C: differential splicing events and covariates
6.6 years ago lirongrossmann ▴ 80
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3.2k
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Comment: C: Different PCA plots using rlog and vsd on the same data set
6.6 years ago lirongrossmann ▴ 80
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2.3k
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Comment: C: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
6.6 years ago lirongrossmann ▴ 80
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2.3k
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Comment: C: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
6.6 years ago lirongrossmann ▴ 80
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3.2k
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Comment: A: Different PCA plots using rlog and vsd on the same data set
6.6 years ago lirongrossmann ▴ 80
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1
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2.5k
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Comment: A: Choosing genes for clustering
6.6 years ago lirongrossmann ▴ 80
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1
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3.2k
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Comment: A: Different PCA plots using rlog and vsd on the same data set
6.6 years ago lirongrossmann ▴ 80
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1
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1.5k
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Comment: C: Selecting genes that best separate between two groups
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 80
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2.5k
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Comment: A: Choosing genes for clustering
6.6 years ago lirongrossmann ▴ 80
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10k
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Comment: C: Limma and batch effect
6.6 years ago lirongrossmann ▴ 80
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1
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10k
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Comment: C: Limma and batch effect
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 80
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10k
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Comment: C: Limma and batch effect
6.6 years ago lirongrossmann ▴ 80
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10k
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Comment: C: Limma and batch effect
6.6 years ago lirongrossmann ▴ 80
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10k
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Comment: A: Limma and batch effect
6.6 years ago lirongrossmann ▴ 80
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